LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Alju03g2865	ATGGTTCACGATCTCATACTTTGGCAGCTACTTGCTTTAGGGTTTCTGATTTCCTTCATAATTCCCGTCGCACACGGAGAATCGTCTACCTGTTTGACTGTCTACAAGAATGGTGGTGCTCCGGCGGTTTTCCAATCCCCGAAATGCCCCCGTTGGAATCTCTTCGATTACGGCTCCCGTTCCCAAGCCCCGGCGCTTTGTCAGCACGCGATGCTTCAAGGCCGAAGAAAATCTCAGGAAGACCGCACTCTCTGCGTCCTTGATGTTCGCATTCCCTTCCCCGGTAAAATGGGAATTAAGGAGGTTATGGTTGGAATTGTAGCAGTTTTTGATGGTCATAATGGAGCAGAAGCTAGTGAGATGGCATCCAAACTTTTGGTGGAGTATTTTGTGTTGCACACCTATTTTCTTTTGGATGCAACATATTCTTTTCTATTGAAGACATCGTCAGGAAGACTGCCTCATAAGAGAGATTATGATGAAGCAGGGCATCTACACAAGTGGGAAGAGATTCTTGGTCGGGATGAATTCCATTTTGGAAGGTTTGAGAATAAACTTTTGGCAAAATTTGACGATTCTTTTCACTTGGAAATTTTGAAGGAAGCATTGTTGAGAGCAATCCATGATATTGATGCAAAATTTTCTGAGGAAGCATCTAGAAGTAATCTTGATTCAGGCTCTACAGCAACAACTGTATTAATTGCCGATGATAAAATTTTGGTTGCCAATATTGGAGACTCTAAGGCCTTCTTGTGTTCTGAGAAGTTTCAGTCTCCCAGAGAGGCTAAAGCATCGTTATTAAAGTTATACAGGCAGAATGAGGGTCATAGTTCCGTTTCCCATGTCTGGGATCGTGAAAAGTATAAATTAGCTTCCTCATTTGGATTCACTCACTTTGCAGCTACGGAATTAACCAGTGACCATCATCCAGACAGAGAAGATGAAAGAATTCGGGTGGAAACAGCTGGTGGTCAAGTTACTGATTGGGGAGGTGTGCCTCGCATAAATGGTCAGCTAGCTATTACACGGGCTATTGGTGATGTGTCCTTCAAAAGTTATGGTGTTATATCAATACCAGAGGTGACAGATTGGCAGCCTCTGACTGCCAATGATAGCTATTTGGTGGTTGCATCTGATGGTGTTTTTGAGAAGATGAGCTCACAGGATGTATGTGATATGTTGTGGGAAGTACATAGTTATGGTAACCCAAGATCCGAGTTTTCCCCATCATGCTCCTATTCGTTGGCAGATTGTATTGTCAAGACTGCCTTGAAAAAGGGAAGTATGGATAATGTGGCAGCAGTTGTGGTTCCTTTGGAATCTGGTATTTTTTCTGATGACTCATTTGGAAACTGTATTGAGAAGAGTGATGTAGATAGCCCGCTATTTGGACTGCAGGAATTTGCTTCCAGAAGCTCTGTTAATGGCATTTCATCAGATCCAATGCAACTGGAGCATCTACGTCCAGTGGATACCGGGTTTAAGCGTATATTGGCTGAAGTGAAATATGGTGATGTTGGATGTTTTTATTTATCTGAAAATCTTGGTGAAGCTATGGACTATAAGAAGCCTGCTACAGAGACCAACTGGTTTAACTATTTATATAAACTACCAGAGCCCTTGCCTGACGCTCTTCATCAACATTCTGGTGGTCCTGTAAATTTGTACAACAACCAAAACTTTTGCTTTCACCTTGGCGTGACTATCAATGGAGCGAACGAGCAATGCATAAATCCTGAATCCTTTGCTAGTTTTATTGGTCTGCTTGAATCAATTCCTTTACATGATACTGGTTCAGATAATGGGTCTTTTGATTCTTCATTCCCTGATATGAGGTATGTTTTGAAAAAGAGGTTTGGCCGTGGATCATATGGTGAAGTGTGGTTGGCCTTTCATTGGAACTGTCAAGTTGACAATGATCCCAAGTTAAGCAAGGATAACAATAATTTCTCTCTTAGCTTTATCAATGTTGATTCATACAATAGAAATAGCAGCTCAAGTGCTCATGATTGCCAGAAAGGTCCTTCTAACATCAACATGTACATTCTGAAACGGATAATGGTAGAGAGAGGAGCTGCTGTTTACTTGAGTGGTCTGAGGGAGAAGTATTTTGGAGAAGTTTTTTTAAATGCTTCCACATGCTTTGGAGATCTACTTTCAGCTGGAAACTCAAACTGTATCCCAAAAAAAGCACAATTCAGGTCTTACGACCAATCAAAAACCAATGATTCCGTGCTACATTATATAAGAAACTCTTGGGGTTCTGAGAATTTATTTACAAACAAATTCCAGTTGCAAAAGGCCATCCATGAAGAGGGTCTCAACCATATTGCAAGATATGTGGAATCTTTTGAATCTCGATCTAATGAATTGTGGCTTGTATTTCATTATGAAGGCATATCTTTGTCCAAACTTATGTATACTGTGGAAGAAGCTAATGATACTGCTGACAGTGAAAGATCTGAGCAAGTAAAACATGTTCAGATATTACGTCCTTCAAAGTGGTGGCATTGGTTGAAGACAACAGAAGAAGGGCAACAGGAAATGCGTAACATTATATGGCAGCTGTTAATGGCACTGAAGTCATGTCATGATCGGAATATCACTCACAGAGATATCAAACCTGAGAATATGGTGATATGCTTTGAAGATCAGGAGACTGGAAGATGCTTAAAAGAGGTTCCAACAATTAATAGGACAATCTCTACCAAAATGCGTATTATTGACTTTGGCAGTGGAATTGATGAGTTTACATTGAAGAACTTGTACGGATCTACTGGGCCATCTCGAGCTGAACAAACTTATGAGTATATGCCTCCTGAAGCTTTGCTAAATGCTACTTGGTATCAAGGACCCACAAGCTCAACTTTGAAATATGATATGTGGAGTGTTGGTGTTGTGATGTTGGAGTTGATCTTAGGAACGCCAAATGTTTTCCAGATAAGTTCTTTAACACGTACTCTTTTGGACCGACATCTTGAGGGTTGGAATGAAGGCATAATGGAGCTGGCGTACAAACTTAGATCTTTCATGGAATTGTGCATATTAATCCCTGGGATTTCTGGCAGTTCCTTCAAACAGTATCGCACGGGAAACCAAGTTGGAGTCCCTCCTGCATCATGGAAATGCTCCGAGGATTTCTTTTCACGTCAAATTAAAAGTCGGGATCCTCTCAAATTAGGGTTTTCAAACATCTGGGCTATGCGGTTAGTGCGTCATCTATTGCTATGGGACCCAGAAGATCGACCGAGTGTTGACGAGGCTTTGCAGCACCCCTATTTTCAACCTCCCCCAAGTGGCTGA	3303	0.4142	MVHDLILWQLLALGFLISFIIPVAHGESSTCLTVYKNGGAPAVFQSPKCPRWNLFDYGSRSQAPALCQHAMLQGRRKSQEDRTLCVLDVRIPFPGKMGIKEVMVGIVAVFDGHNGAEASEMASKLLVEYFVLHTYFLLDATYSFLLKTSSGRLPHKRDYDEAGHLHKWEEILGRDEFHFGRFENKLLAKFDDSFHLEILKEALLRAIHDIDAKFSEEASRSNLDSGSTATTVLIADDKILVANIGDSKAFLCSEKFQSPREAKASLLKLYRQNEGHSSVSHVWDREKYKLASSFGFTHFAATELTSDHHPDREDERIRVETAGGQVTDWGGVPRINGQLAITRAIGDVSFKSYGVISIPEVTDWQPLTANDSYLVVASDGVFEKMSSQDVCDMLWEVHSYGNPRSEFSPSCSYSLADCIVKTALKKGSMDNVAAVVVPLESGIFSDDSFGNCIEKSDVDSPLFGLQEFASRSSVNGISSDPMQLEHLRPVDTGFKRILAEVKYGDVGCFYLSENLGEAMDYKKPATETNWFNYLYKLPEPLPDALHQHSGGPVNLYNNQNFCFHLGVTINGANEQCINPESFASFIGLLESIPLHDTGSDNGSFDSSFPDMRYVLKKRFGRGSYGEVWLAFHWNCQVDNDPKLSKDNNNFSLSFINVDSYNRNSSSSAHDCQKGPSNINMYILKRIMVERGAAVYLSGLREKYFGEVFLNASTCFGDLLSAGNSNCIPKKAQFRSYDQSKTNDSVLHYIRNSWGSENLFTNKFQLQKAIHEEGLNHIARYVESFESRSNELWLVFHYEGISLSKLMYTVEEANDTADSERSEQVKHVQILRPSKWWHWLKTTEEGQQEMRNIIWQLLMALKSCHDRNITHRDIKPENMVICFEDQETGRCLKEVPTINRTISTKMRIIDFGSGIDEFTLKNLYGSTGPSRAEQTYEYMPPEALLNATWYQGPTSSTLKYDMWSVGVVMLELILGTPNVFQISSLTRTLLDRHLEGWNEGIMELAYKLRSFMELCILIPGISGSSFKQYRTGNQVGVPPASWKCSEDFFSRQIKSRDPLKLGFSNIWAMRLVRHLLLWDPEDRPSVDEALQHPYFQPPPSG	1100

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Alju03g2865	1100	SUPERFAMILY	PP2C-like	66	440	IPR036457	-
	Alju03g2865	1100	FunFam	uncharacterized protein LOC106771884 isoform X8	834	1095	-	-
	Alju03g2865	1100	ProSiteProfiles	PPM-type phosphatase domain profile.	66	439	IPR001932	-
	Alju03g2865	1100	CDD	PP2Cc	73	439	IPR001932	-
	Alju03g2865	1100	PANTHER	PROTEIN PHOSPHATASE	61	438	IPR015655	GO:0004722\|GO:0006470
	Alju03g2865	1100	Pfam	Protein kinase domain	844	1094	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Alju03g2865	1100	Gene3D	-	64	442	IPR036457	-
	Alju03g2865	1100	ProSiteProfiles	Protein kinase domain profile.	613	1094	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Alju03g2865	1100	Pfam	Protein phosphatase 2C	172	432	IPR001932	-
	Alju03g2865	1100	Gene3D	Transferase(Phosphotransferase) domain 1	834	1095	-	-
	Alju03g2865	1100	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	868	880	IPR008271	GO:0004672\|GO:0006468
	Alju03g2865	1100	SMART	serkin_6	613	1094	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Alju03g2865	1100	SMART	PP2C_4	58	437	IPR001932	-
	Alju03g2865	1100	SUPERFAMILY	Protein kinase-like (PK-like)	612	1096	IPR011009	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Alju03g2865	Alju-ChrAlju03	54215699	54227886	Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Alju03g2865	688	1099	PP2C-type Phosphatase Gene Family	AT3G63340	61.985	5.93e-176	518

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	CMGC_GSKL	Alju03g2865		Pkinase	1.3e-25	CL0016