LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Alju03g2864	ATGGATTATCCGTATCCAGTGAAAGAAGAGTATCTGGAAGCGACTTCATCTCATTCAGGAAGTGAAGCATCAACAATTCCCCCTCCGCAGCCAATGGAGGGGCTACACGAGCTGGGGCCACCACCATTTTTGACCAAGACATTCGACGTGGTGGACGACCCAATTACCAATCTTATGGTTTCTTGGAGCAGAGGGGGCACTAGTTTCGTGGTTTGGGATCCACATGCCTTCTCTACGAGCCTCCTTCCCAGATACTTTAAGCACAACAATTTCTCAAGCTTTGTCAGGCAATTGAACACTTATGGATTTAGGAAAATTGATCCAGACAGATGGGAGTTTGCAAATGAAGGATTTCTGAGAGGCCACAGGCATCTTCTGAGGAACATAAGGAGAAGGAAGGCATCTGCTAATTTGAGTCTTTCCCAACAAGCACAACAGCAAGGTCATTGTGTTGAGGTTGAAAGTTTTGGACTGGACGAAGAAATTGACCGTTTGAGGCGGGACAAGCAGGTGTTAATGATGGAGTTGGTGAGGCTTAGGCAGCAGCAACAGAACACTAGATCATACCTTCAAGCAATGGAACAAAGGTTACAGGGCACTGAAAAAAAACAGCAACAGATGATGGCTTTCTTAGCCAGAGCCATGAAAAATCCAGCCTTTCTCCAGCAACTACTCCAACAGAAAGACAAGAGAAAGGAGCTTGAAGAAGCCATAACTAAGAAGAGGAGAAGGCCAATTGAGCAAGGACCAAGTTGTGTTGGGGAATCAAGAAGTGGAAATGAAGCAATGAGCCCTATAAAAGCCGAGCCTTTAGAATTTAGTAACTATGGCTTTGAACTGTCAGAACTGGAAGTGTTAGCCATGGAAATGCAGGGTTATGGTAGGGGTAGAAGAGAACAGGAGGCGTCAGAAGAACCACGGGGGAGGCTGGGAAAAGAACTTGATGAGGGTTTCTGGGAAGAGCTGTTCAGTGAGGATTTTGGGTGTGAAATAGACATTTCAAGCACCGAAGGTGAAGATGATGTCCATGTCTTGGCCAATCGCTTAGGCTACTTGGGTTCGAGTCCTAAGTAA	1074	0.459	MDYPYPVKEEYLEATSSHSGSEASTIPPPQPMEGLHELGPPPFLTKTFDVVDDPITNLMVSWSRGGTSFVVWDPHAFSTSLLPRYFKHNNFSSFVRQLNTYGFRKIDPDRWEFANEGFLRGHRHLLRNIRRRKASANLSLSQQAQQQGHCVEVESFGLDEEIDRLRRDKQVLMMELVRLRQQQQNTRSYLQAMEQRLQGTEKKQQQMMAFLARAMKNPAFLQQLLQQKDKRKELEEAITKKRRRPIEQGPSCVGESRSGNEAMSPIKAEPLEFSNYGFELSELEVLAMEMQGYGRGRREQEASEEPRGRLGKELDEGFWEELFSEDFGCEIDISSTEGEDDVHVLANRLGYLGSSPK	357

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Alju03g2864	357	PANTHER	HEAT SHOCK TRANSCRIPTION FACTOR	29	255	IPR027725	-
	Alju03g2864	357	FunFam	Heat shock transcription factor 1	36	133	-	-
	Alju03g2864	357	Coils	Coil	162	182	-	-
	Alju03g2864	357	Gene3D	-	36	133	IPR036388	-
	Alju03g2864	357	MobiDBLite	consensus disorder prediction	242	261	-	-
	Alju03g2864	357	Coils	Coil	224	244	-	-
	Alju03g2864	357	MobiDBLite	consensus disorder prediction	14	37	-	-
	Alju03g2864	357	ProSitePatterns	HSF-type DNA-binding domain signature.	82	106	IPR000232	GO:0003700\|GO:0006355\|GO:0043565
	Alju03g2864	357	SMART	hsfneu3	39	132	IPR000232	GO:0003700\|GO:0006355\|GO:0043565
	Alju03g2864	357	SUPERFAMILY	"Winged helix" DNA-binding domain	39	132	IPR036390	-
	Alju03g2864	357	Pfam	HSF-type DNA-binding	43	132	IPR000232	GO:0003700\|GO:0006355\|GO:0043565
	Alju03g2864	357	PRINTS	Heat shock factor (HSF) domain signature	94	106	IPR000232	GO:0003700\|GO:0006355\|GO:0043565
	Alju03g2864	357	PRINTS	Heat shock factor (HSF) domain signature	43	66	IPR000232	GO:0003700\|GO:0006355\|GO:0043565
	Alju03g2864	357	PRINTS	Heat shock factor (HSF) domain signature	81	93	IPR000232	GO:0003700\|GO:0006355\|GO:0043565

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Alju03g2864	Alju-ChrAlju03	54206923	54208712	Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Alju03g2864	21	355	HSF	AT3G22830	54.865	9.68e-129	373

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	HSF	Alju03g2864		HSF_DNA-bind	7.1e-31	CL0123

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Alju01g1834	01	14936225	14938684	Alju03g2864	03	54206923	54208712	CCT