Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju03g2861 ATGTTTTCTGCAGCCATGTCCAATTCTGCTTATTTGTCTGAAGAAGCCACTGTCTCTTTCCCTTCTTCTACTAGACTCCACAACTTCACCGAACCAATCCCTGACCCTCCTCAGCAGCCTCAAAAGATAAAGAAAAAAAGAAGCCTCCCGGGAAATCCAGACCCCGATGCTGAGGTGATTGCGTTATCCCCAAAGACCCTTTTGGCCACCAATAGATATGTGTGTGAAATTTGCAACAAGGGTTTTCAGAGAGATCAGAACCTTCAGCTACACAGGAGGGGGCATAACCTTCCATGGAAGCTGAAACAAAGGAACAGCAAGGAGGTGAAAAAGAGAGTTTATGTTTGCCCCGAGCCTTCTTGTGTTCACCACAATCCCTCCAGAGCTCTGGGTGATCTCACAGGTATTAAGAAACATTATTGCAGAAAACATGGAGAGAAGAAGTGGAAATGTCACAAGTGCTCCAGAATCTACGCTGTTCAGTCTGATTGGAAAGCTCACTCCAAAACCTGTGGAACTAGAGAATACAGATGTGATTGTGGAACCGTTTTTTCCAGGAAGGACAGCTTCATAACTCATAGGGCATTTTGTGATGCATTGGCTGAAGAAAGTACAAGACTCGCTGCTAATCAACTAGCTTCCACAAACCCAATGTTATTTCAATCTCTCTTCCCTTACCAAAATCAAATTGTGATGAATCCCTGGGACCCATCTTCTCAAGAAAACCCTAACCCTAATAACATGGATGCCGTCCAGATCAAGACGGAAGCTCAGTGTTTTGAGGTCCCATGCCTCTTTTCTACGGCGCCATTTCTTCAAGTGCAGCAGCAGAATCAGAAGAACATGATAAACCCTTTCTTGGGAACTCTCCATGTGCCTTCAAACGCCGCCACGTCGGCCCATCTGTCAGCCACTGCGCTCCTCAGAAAGGCTGCAACTGTGGGCTCCACTGCCATCACGGCAGGCCCAGGTGCTGCCGCTGCAGCTGATGGTGGTGGACCCCAGTCAACGATGCCTCACGTGACTCAGCCAAGCACGGGCGAGTTTGGACCTCCGACTCAGCAGACCGAATCGGCTGGTCATGATTACGTTGGAGGGCTCATGACCCGGAATCAAAGTGAACGTCTGACCAGGGACTTCCTCGGCCTGACCGCCTATGCAGACAGCGGAAGAAACGGTGGCTCCGTTGACGTTGGCCTGAACGCGAAGGACATGCTGGTGTTCACTGGGGGCGTAGAGTATGATCCGTGTCTTCCAGTTCCATACGATCACCATTATCACTCACTCTTCAAGTCCCAACAAGATTTTGGATTCTTTGGGACTGTCACTGCCCCGGCGACGTGGGGGAGCTCTTGA 1356 0.4956 MFSAAMSNSAYLSEEATVSFPSSTRLHNFTEPIPDPPQQPQKIKKKRSLPGNPDPDAEVIALSPKTLLATNRYVCEICNKGFQRDQNLQLHRRGHNLPWKLKQRNSKEVKKRVYVCPEPSCVHHNPSRALGDLTGIKKHYCRKHGEKKWKCHKCSRIYAVQSDWKAHSKTCGTREYRCDCGTVFSRKDSFITHRAFCDALAEESTRLAANQLASTNPMLFQSLFPYQNQIVMNPWDPSSQENPNPNNMDAVQIKTEAQCFEVPCLFSTAPFLQVQQQNQKNMINPFLGTLHVPSNAATSAHLSATALLRKAATVGSTAITAGPGAAAAADGGGPQSTMPHVTQPSTGEFGPPTQQTESAGHDYVGGLMTRNQSERLTRDFLGLTAYADSGRNGGSVDVGLNAKDMLVFTGGVEYDPCLPVPYDHHYHSLFKSQQDFGFFGTVTAPATWGSS 451
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju03g2861 451 SMART c2h2final6 149 169 IPR013087 -
Alju03g2861 451 SMART c2h2final6 114 144 IPR013087 -
Alju03g2861 451 SMART c2h2final6 73 95 IPR013087 -
Alju03g2861 451 MobiDBLite consensus disorder prediction 336 360 - -
Alju03g2861 451 ProSiteProfiles Zinc finger C2H2 type domain profile. 73 95 IPR013087 -
Alju03g2861 451 SUPERFAMILY beta-beta-alpha zinc fingers 72 169 IPR036236 -
Alju03g2861 451 FunFam protein indeterminate-domain 5, chloroplastic-like 127 206 - -
Alju03g2861 451 Gene3D Classic Zinc Finger 107 197 - -
Alju03g2861 451 Pfam Zinc finger, C2H2 type 73 95 IPR013087 -
Alju03g2861 451 ProSitePatterns Zinc finger C2H2 type domain signature. 75 95 IPR013087 -
Alju03g2861 451 MobiDBLite consensus disorder prediction 325 361 - -
Alju03g2861 451 MobiDBLite consensus disorder prediction 25 57 - -
Alju03g2861 451 FunFam protein indeterminate-domain 12-like 52 120 - -
Alju03g2861 451 Gene3D Classic Zinc Finger 72 96 - -
Alju03g2861 451 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 30 387 IPR031140 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju03g2861 Alju-ChrAlju03 54194588 54197223 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju03g2861 39 440 IDZ Gene Family AT4G02670 51.456 2.25e-123 363
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Alju03g2861 zf-C2H2 0.003 CL0361