Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju03g2837 ATGGTGAATCAGGTAGTAAAAGTGAGGAGGGAAACTCTTGTAGCATGCATGACTTGCCCACTCTGCAACAAGTTGTTCAGAGACGCCACCACCATATCTGAATGTCTTCATACGTTTTGCAGGAAATGCATCTATGATAAAATTACAGATGAAGAATTAGAACACTGTCCAATCTGTAATATTGATCTGGGTTGTGTTCCGCTTGAGAAATTGAGGCCAGACCACAATTTACAAGATGTAAGAGCTAAAATTTTCCCTTTGAAGAGAAGAAAGGCAAAAACACCTGAGGCTGTTCCATCTATAACAATACCAGCTAGAAGAAAGGAGAGATCACTTTCATCTTTGGTTGTCAGCACTCCCAGAGTATCAACACAGGTAACCATGACTGGGAGAAGAACAAAACCAACTAGAAAGGCCAGTGGTCCGCGAGCCTCTAGTTTTTCCATTGAAAAGCCTGTTAAAAAAGAGGAATCAGGAGAAGATCATACAGAGAGTTCAAGCTCTCCAGACACTTTGAACAAGTTTACTCAGAATACCAAACAGAATTTGTCCCCTCTTGAGTCTAACCAATCCTTACGCACCAAAGAGGGAGATAATGAAGCGGAACCTTGGGAAGCAAAATTGGATCTTTGGAAACCTTTGAATTGTTTAGTAGAAGTGGCAAGTAGGAGTAAATCTTTCAAGTCTAGTGTGCAAGGGTCTGATACTAAACATGAACCCGTGCAAATAAATGAGACTGACTCTCAAGTGCAAAAATCCAAAAATAAAGAGAATAAGCGCAAAGCCAAAGTTGAGCCTGAAAAAGTGGACGCAGATCCTACCTCTTTAAATACAGCAAAGCCTAATAAGTCACGCAAAGTTCGTCGTAAAAGGGAGCCTCTTTTTGGAAAACCAGGCATATCTCCTCAAGCTGTTCTGGATGCAAACAGTGCTACATTCAAAAGGAGAACTGGTCCACTTTGGTTTGCCTTAGTAGCTTCTGAAGATCAGGAAGGAGATGCATCCATGGCCCAAATTCCTGCAAGTTATTTAAGAATAAAGGATGGAAGTTTACCTGTGTCATTTATCCACAAATACCTAATGAAGAAACTAGAGCTGAGCAGTGAAACAGAGGTTGAGATTAGATGCATGGGACAACCAGTGGTCCCTACGCTGCAATTATGTAGTTTGGTTGACTTGTGGCTGCAGACAGCATCTACGACACAGCGAATTCCAGCAACAATTGGATCCTCAGCCAAGGATTTTGTAATGGTTCTAGCTTATACGCGCAAGTTTCCACACCATTGA 1287 0.4165 MVNQVVKVRRETLVACMTCPLCNKLFRDATTISECLHTFCRKCIYDKITDEELEHCPICNIDLGCVPLEKLRPDHNLQDVRAKIFPLKRRKAKTPEAVPSITIPARRKERSLSSLVVSTPRVSTQVTMTGRRTKPTRKASGPRASSFSIEKPVKKEESGEDHTESSSSPDTLNKFTQNTKQNLSPLESNQSLRTKEGDNEAEPWEAKLDLWKPLNCLVEVASRSKSFKSSVQGSDTKHEPVQINETDSQVQKSKNKENKRKAKVEPEKVDADPTSLNTAKPNKSRKVRRKREPLFGKPGISPQAVLDANSATFKRRTGPLWFALVASEDQEGDASMAQIPASYLRIKDGSLPVSFIHKYLMKKLELSSETEVEIRCMGQPVVPTLQLCSLVDLWLQTASTTQRIPATIGSSAKDFVMVLAYTRKFPHH 428
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju03g2837 428 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 2 106 IPR013083 -
Alju03g2837 428 Pfam Zinc finger, C3HC4 type (RING finger) 19 59 - -
Alju03g2837 428 PANTHER E3 UBIQUITIN PROTEIN LIGASE DRIP1 2 424 IPR044807 GO:0004842
Alju03g2837 428 ProSiteProfiles Zinc finger RING-type profile. 19 60 IPR001841 -
Alju03g2837 428 SMART ring_2 19 59 IPR001841 -
Alju03g2837 428 ProSitePatterns Zinc finger RING-type signature. 35 44 IPR017907 -
Alju03g2837 428 MobiDBLite consensus disorder prediction 109 201 - -
Alju03g2837 428 SUPERFAMILY RING/U-box 13 83 - -
Alju03g2837 428 MobiDBLite consensus disorder prediction 165 192 - -
Alju03g2837 428 MobiDBLite consensus disorder prediction 225 249 - -
Alju03g2837 428 MobiDBLite consensus disorder prediction 250 270 - -
Alju03g2837 428 MobiDBLite consensus disorder prediction 225 301 - -
Alju03g2837 428 CDD RING-HC_PCGF 17 60 - -
Alju03g2837 428 MobiDBLite consensus disorder prediction 112 143 - -
Alju03g2837 428 MobiDBLite consensus disorder prediction 149 164 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju03g2837 Alju-ChrAlju03 53993839 53999253 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju03g2837 3 347 C3H Transcription Factor Family AT2G30580 55.202 8.80e-119 348
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Alju01g1803 01 14634827 14640131 Alju03g2837 03 53993839 53999253 CCT