Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju03g2830 ATGGCAACGGAAGAGCCCGCTGTAGTTGTGGAGTCTGTACCGGAACCAGTTGTTACCGAGCCTGCCGAGGAGAAAGAGGCAGCTGATGCTGGTGGCAAGGCCAAGAAAGCTAAGGAGCCAAAGCCTAAGAAGGCTGCTGCTCCTAGATCTCGGAATCCTCCTGCGCATCCTCCTTATGAAGAGATGATTAAGGACGCAATTGTTACGCTGAAGGAGAGGACTGGTTCTAGCCAGTACGCGATTACCAAATTTATCGAAGAGAAGTACAAGCAGCTTCCGTCCAACTTTAGGAAGATTGTATTACTCCAATTAAAGAAGCTTGTGGCTGCCGAAAAGCTTGTTAAGGTCAAGGGCTCATTCAAGCTTCCCGCTGTTAGGTCATCGGCGCCTAAGGCATCTGGGAATTCTGCTGCGGCCAAGAAGCCTGCAGTTGCTAAGCCTAAGGCTAAACCTGCTGCTAAGCCTAAGGAGACGAAATCAGTCAAGGCGGTAACTAAAGCGCGTCCTAAGCCTAAGGCAGTCACCAAGGCAAAGCCTAAAGCGGCTGCCAAGCCTAAGGCTGCTGCCAAGCCCAAAGCAGCTCCCGCGAAGCCAAAGGCTGCTCCAGCGAAGCCAAAGGCTGCTGCCTCGAAGCCTAAGGCTGCTGCTAAGCCCAAGGCAGCCGGAAGACCAAAGCCCAAAGAGAGACCAGCCAAGGCGTCGAGGACATCGACCAGGACATCCCCGGGCAAGAAGGCCCCGGCTCCTAAACCGGCACCAAAGAAGGCTGCGGCGGCAGCCAAGAAAGCTCCTGCTAAAGGCGTCAAGCCTAAGAGTGTGAAGTCTCCGGCAAAGAAGGCTACGACAAAGAGAGGAAGGAAGTGA 864 0.5405 MATEEPAVVVESVPEPVVTEPAEEKEAADAGGKAKKAKEPKPKKAAAPRSRNPPAHPPYEEMIKDAIVTLKERTGSSQYAITKFIEEKYKQLPSNFRKIVLLQLKKLVAAEKLVKVKGSFKLPAVRSSAPKASGNSAAAKKPAVAKPKAKPAAKPKETKSVKAVTKARPKPKAVTKAKPKAAAKPKAAAKPKAAPAKPKAAPAKPKAAASKPKAAAKPKAAGRPKPKERPAKASRTSTRTSPGKKAPAPKPAPKKAAAAAKKAPAKGVKPKSVKSPAKKATTKRGRK 287
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju03g2830 287 MobiDBLite consensus disorder prediction 150 164 - -
Alju03g2830 287 Pfam linker histone H1 and H5 family 56 122 IPR005818 GO:0000786|GO:0003677|GO:0006334
Alju03g2830 287 MobiDBLite consensus disorder prediction 272 287 - -
Alju03g2830 287 CDD H15 53 132 IPR005818 GO:0000786|GO:0003677|GO:0006334
Alju03g2830 287 Gene3D - 51 143 IPR036388 -
Alju03g2830 287 PRINTS Histone H5 signature 144 158 IPR005819 GO:0000786|GO:0003677|GO:0006334|GO:0030527
Alju03g2830 287 PRINTS Histone H5 signature 180 197 IPR005819 GO:0000786|GO:0003677|GO:0006334|GO:0030527
Alju03g2830 287 PRINTS Histone H5 signature 69 86 IPR005819 GO:0000786|GO:0003677|GO:0006334|GO:0030527
Alju03g2830 287 PRINTS Histone H5 signature 42 63 IPR005819 GO:0000786|GO:0003677|GO:0006334|GO:0030527
Alju03g2830 287 PRINTS Histone H5 signature 202 221 IPR005819 GO:0000786|GO:0003677|GO:0006334|GO:0030527
Alju03g2830 287 PANTHER HISTONE H1 26 261 - -
Alju03g2830 287 MobiDBLite consensus disorder prediction 18 46 - -
Alju03g2830 287 ProSiteProfiles Linker histone H1/H5 globular (H15) domain profile. 55 124 IPR005818 GO:0000786|GO:0003677|GO:0006334
Alju03g2830 287 SMART h15plus2 53 119 IPR005818 GO:0000786|GO:0003677|GO:0006334
Alju03g2830 287 MobiDBLite consensus disorder prediction 119 287 - -
Alju03g2830 287 FunFam Histone H1 50 135 - -
Alju03g2830 287 MobiDBLite consensus disorder prediction 165 185 - -
Alju03g2830 287 SUPERFAMILY "Winged helix" DNA-binding domain 52 124 IPR036390 -
Alju03g2830 287 MobiDBLite consensus disorder prediction 1 62 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju03g2830 Alju-ChrAlju03 53946554 53947515 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju03g2830 57 123 Single Myb Histone (SMH) Gene Family AT1G72740 35.821 7.25e-07 47.8