LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Alju03g2821	ATGTCCACAAAAATGGCGATTTTGGAGGGCCTTTGGACAATGCCATTTCTCCAAACCATAGGATCTTGCGAAGGCGAGTCCAAGCGCGAAAGAAAAGACCAAGAAAATTCGAGTGTTTATTCAGAGTTTTTCTTCTTGGCTCTAATCAGATCACATCGTCCCACTGAAATTTGGGCATTTTGTTTCACTGACATTGACGTTGATTTCCGGGGATTTGATCCTACAAGTGTACGATATACGCAATTTCCGACTTGTGATTCATGTTGTTTGAAGAAACATATCAATGCAGCCGAGCTTCATATTGAGAAAATGGGAACTTCGGAAAACATAGTTGTTGGTTCTCACATTTGGGTTGGTGATCCAGAACAAGTTTGGATTGATGGAGAAGTATTGAAAATCAATGGAGAGGAAGTTGAGGTTCAAACTGGTTCTGGGAATATGGTTGTTGCCAGTTTGTCAAAATTACATCCCAAGGATGCAGATGCTCCTGCTGATGGAGTTGATGATATGACCAAGCTTGCTTATTTGCATGAGCCAGCAGTGCTTCATAATTTAGCAACTAGATACATGAAAAATGAGATATATACTTACACTGGAAATATTCTTATTGCTGTCAATCCCTTTCAAAGTCTTCTGCACTTGTATGACGCTGATGTGATGCAAAAGTACAAGGGAGCAATGCTTGGAGATTTAAGCCCTCATGTATTTGCTATTGCTGACGCTGCATACAGGGCAATGGTCAATGAGGAGAAAAGCAATGCTATTCTTGTTAGTGGTGAGAGTGGAGCTGGTAAGACAGAAACCACCAAAATGATCATGCGTTATCTGGCATATTTGGGTGGACATGCTGCAACTGAAGGAAATAGTGTTGAGCAACAAGTCTTAGAATCAAACCCAGTTCTTGAAGCATTTGGCAATGCAAAAACTGTCAGAAATAACAATTCCAGTCGTTTTGGAAAATTTGTTGAGATTCAATTCAATAAGCATGGCAAGATATCTGGCACAGCCATTAGAACATATCTCCTAGAGAAATCTCGTGTTTGCCAAATCTCTGATCCTGAGCGTAACTATCACTGTTTTTACCTTCTCTGTGCAGCTCCGCCTGAGGAAAAGCAGAGATACAAGTTGGGAGATCCTAAATCATTTCACTACCTTAATCAATCTAGTTGTTATGAATTAGATGGTGTTAATGCTGCCCAGGAGTACTTGAGCACGAAGAGAGCCATGGATATAGTGGGAATCAATATTGAAGAACAGGATGCAATTTTCAGAGTTGTGGCTGCTATTCTTCATCTTGGAAACGTTAAGTTTGAAAAATCAGAAGAAGACTCATCAGTTTTAGCAGATGAAGAATCAAAGTTCCATCTCGAAATGACAGCAGAACTTCTCAAGTGTGTTCCAAGTGCTTTGGAAGATGCACTTTGTAAGCGTATGATGATTACCCCGGAGGAAGTCATCAAGAGAAGTCTTGATCCTCTTGCTGCGACAGTTAGCAGGGATGGTTTAGCCAAGACATTATATTCTCGGTTATTTGACTGGTTAGTCCAAAAAATAAATGTCTCCATTGGGCAGGATCCCAGCTCAAAATGTATCGTTGGAGTTCTTGACATATATGGCTTTGAAAGTTTTCAAACTAATCGTTTTGAGCAGTTTTGTATTAATTACACAAATGAAAAGCTGCAGCAACACTTCAACCAGCATGTGTTTAAGATGGAGCAAGAGGAATATACAAGAGAAGGAATTGATTGGAGCTACTTAGAATTTGTAGATAATCAAGATGTATTGGATCTTATTGAAAAGAAACCAGGTGGAATCATTGCTCTGCTTGATGAGGCATGTATGTTTCCAAAGTCAACTCATGAAACATTTTCGCAAAAGCTTTATCAGACTTTCAAAAATAACAAGCGCTTCATCAAGCCAAAATTATCTCAATCAGATTTTACCATTGTTCATTATGCAGGGGAGGTTCAGTATCAGTCTGAACAGTTTTTAGACAAAAACAAAGACTATGTTGTTCCTGAGCATCAAGACATGCTGAGTTCTTCCAAATGTTTTTTTGTAGCAGGCCTTTTCCCCCCAATTTCTGAGGAGACTGCCAAATCTGCTAAATTTTCTTCTATCGGTGCCCGCTTCAAGCTACAATTACAACAACTGATGGATACGCTAAAATCCACACAGCCCTACTATATTAGATGTGTGAAGCCAAATGATGAATTAAAACCTGCTGTGTTTGATAATATGAGTGTCATCCAACAACTTCGCTCTGGTGGTGTTCTTGAAGCAGTAAGAATTAAATGTGCTGGATTTCCAACACACAGGACCTTTCGTGATTTGTTGACTCGCTTGGCTCTTTTTGCTCCAGAGATTGTCAAAGAGAACAGCTCTGATGAGAAAGATTCATGTATAAAGATTTTGCAGAAGACTGGCCTTACAGGTTATCAGATAGGGGAATCACAGATATTCTTGAGAGCTGGTCAGATGGCTAAGTTAGACGCTCGAAGGGCACTACTCCTTAGCAACTCTGCTATTGTTATCCAGAAACGGATCAAAACTCATCTGGCTCAGAGAAGATATGTAACATTGCAAAATTCTTCTGTCTGTGTGCAATCTTTTTGTAGAGGAGAAATGGCTCGGAGAATATATTATCACATGAAGAGAAATGCAGCTGCTGTCAGAATTCAAAGGAATATTCGTGGAAAAATAGCGAGGAAAAAATACAACCAAATATATACTTCTGCCATTGTATTGCAAACAGGCTTCCGGGCTATGGCAGCTCATGATGAATTGGGATATAGACTGGCAACTAGCGCATCCATTAAACTTCAGGTTGCAGAGAAAGCAGTTGAAATTGAAAGCCAGGTTGTGGAGAAAGTAGTGGTAAATGAAAGCCCTTATGTGAAAGAATCCACAAATCATTGTAAAGATACTGAAAGCATTCATGCCATCAAAGAATCCTCAAGTCCTCTCCAAGACCCTGAAAAGATCAAGGCTCTTACTTCAGAAGTCATAAATTTAAAGGTTATGTTGCATGGAGAAAAACAAAGAGCAGATGATTGTGAAAGGAAATATGAGGAAGCCCAAGAATCTAGAGAAGAGTTACGCCAAAAGCTAGCAGAAGCAGAAGAAAGAGTATATCAGCTTCAAGACTCACTGGACAGGATGATATCTTCCATTTCAAGCCAAGTCGCGGGACTGAATGTGATATTAAGTACTTCATCAAGATTAAGTTCAACTTTTCGGCCTATTGCTAGAGTTGATGTTGCTTCCAGCAACTCTGATACTTCATCCACAGATTCTGATTTCACAGCTTCAGTTCATGCTTCAAATACAACCAATCAGCTTAACTCCCAGCCAAGTCCCATTCAGCTAGCTGTTCAGGGTGTCACTGTAGCGGATGATTCAGGATCTGAAGGTGAAAAGGAGGGAACATTCGATGATTGCTTCTAG	3447	0.3989	MSTKMAILEGLWTMPFLQTIGSCEGESKRERKDQENSSVYSEFFFLALIRSHRPTEIWAFCFTDIDVDFRGFDPTSVRYTQFPTCDSCCLKKHINAAELHIEKMGTSENIVVGSHIWVGDPEQVWIDGEVLKINGEEVEVQTGSGNMVVASLSKLHPKDADAPADGVDDMTKLAYLHEPAVLHNLATRYMKNEIYTYTGNILIAVNPFQSLLHLYDADVMQKYKGAMLGDLSPHVFAIADAAYRAMVNEEKSNAILVSGESGAGKTETTKMIMRYLAYLGGHAATEGNSVEQQVLESNPVLEAFGNAKTVRNNNSSRFGKFVEIQFNKHGKISGTAIRTYLLEKSRVCQISDPERNYHCFYLLCAAPPEEKQRYKLGDPKSFHYLNQSSCYELDGVNAAQEYLSTKRAMDIVGINIEEQDAIFRVVAAILHLGNVKFEKSEEDSSVLADEESKFHLEMTAELLKCVPSALEDALCKRMMITPEEVIKRSLDPLAATVSRDGLAKTLYSRLFDWLVQKINVSIGQDPSSKCIVGVLDIYGFESFQTNRFEQFCINYTNEKLQQHFNQHVFKMEQEEYTREGIDWSYLEFVDNQDVLDLIEKKPGGIIALLDEACMFPKSTHETFSQKLYQTFKNNKRFIKPKLSQSDFTIVHYAGEVQYQSEQFLDKNKDYVVPEHQDMLSSSKCFFVAGLFPPISEETAKSAKFSSIGARFKLQLQQLMDTLKSTQPYYIRCVKPNDELKPAVFDNMSVIQQLRSGGVLEAVRIKCAGFPTHRTFRDLLTRLALFAPEIVKENSSDEKDSCIKILQKTGLTGYQIGESQIFLRAGQMAKLDARRALLLSNSAIVIQKRIKTHLAQRRYVTLQNSSVCVQSFCRGEMARRIYYHMKRNAAAVRIQRNIRGKIARKKYNQIYTSAIVLQTGFRAMAAHDELGYRLATSASIKLQVAEKAVEIESQVVEKVVVNESPYVKESTNHCKDTESIHAIKESSSPLQDPEKIKALTSEVINLKVMLHGEKQRADDCERKYEEAQESREELRQKLAEAEERVYQLQDSLDRMISSISSQVAGLNVILSTSSRLSSTFRPIARVDVASSNSDTSSTDSDFTASVHASNTTNQLNSQPSPIQLAVQGVTVADDSGSEGEKEGTFDDCF	1148

Annotation information

Seq ID	Length	Analysis	Description	Start	End	IPR	GO
Alju03g2821	1148	ProSiteProfiles	IQ motif profile.	886	912	IPR000048	GO:0005515
Alju03g2821	1148	Gene3D	Myosin VI head, motor domain, U50 subdomain	414	703	-	-
Alju03g2821	1148	SMART	iq_5	837	859	IPR000048	GO:0005515
Alju03g2821	1148	SMART	iq_5	860	882	IPR000048	GO:0005515
Alju03g2821	1148	SMART	iq_5	885	907	IPR000048	GO:0005515
Alju03g2821	1148	Gene3D	-	888	935	-	-
Alju03g2821	1148	Gene3D	-	838	887	-	-
Alju03g2821	1148	CDD	MYSc_Myo11	179	823	IPR036018	-
Alju03g2821	1148	Pfam	Myosin N-terminal SH3-like domain	113	150	IPR004009	GO:0003774\|GO:0005524\|GO:0016459
Alju03g2821	1148	Gene3D	Kinesin motor domain	168	764	IPR036961	-
Alju03g2821	1148	ProSiteProfiles	Prokaryotic membrane lipoprotein lipid attachment site profile.	1	23	-	-
Alju03g2821	1148	Pfam	IQ calmodulin-binding motif	864	881	IPR000048	GO:0005515
Alju03g2821	1148	Pfam	IQ calmodulin-binding motif	888	906	IPR000048	GO:0005515
Alju03g2821	1148	Pfam	IQ calmodulin-binding motif	840	858	IPR000048	GO:0005515
Alju03g2821	1148	Pfam	Myosin head (motor domain)	167	823	IPR001609	GO:0003774\|GO:0005524\|GO:0016459
Alju03g2821	1148	ProSiteProfiles	Myosin N-terminal SH3-like domain profile.	111	160	IPR004009	GO:0003774\|GO:0005524\|GO:0016459
Alju03g2821	1148	Gene3D	-	769	836	-	-
Alju03g2821	1148	FunFam	Class V myosin	541	683	-	-
Alju03g2821	1148	PRINTS	Myosin heavy chain signature	531	559	IPR001609	GO:0003774\|GO:0005524\|GO:0016459
Alju03g2821	1148	PRINTS	Myosin heavy chain signature	252	277	IPR001609	GO:0003774\|GO:0005524\|GO:0016459
Alju03g2821	1148	PRINTS	Myosin heavy chain signature	584	612	IPR001609	GO:0003774\|GO:0005524\|GO:0016459
Alju03g2821	1148	PRINTS	Myosin heavy chain signature	195	214	IPR001609	GO:0003774\|GO:0005524\|GO:0016459
Alju03g2821	1148	PRINTS	Myosin heavy chain signature	299	326	IPR001609	GO:0003774\|GO:0005524\|GO:0016459
Alju03g2821	1148	Gene3D	-	541	725	-	-
Alju03g2821	1148	SUPERFAMILY	P-loop containing nucleoside triphosphate hydrolases	138	887	IPR027417	-
Alju03g2821	1148	ProSiteProfiles	IQ motif profile.	861	890	IPR000048	GO:0005515
Alju03g2821	1148	ProSiteProfiles	Myosin motor domain profile.	165	835	IPR001609	GO:0003774\|GO:0005524\|GO:0016459
Alju03g2821	1148	Coils	Coil	1009	1057	-	-
Alju03g2821	1148	SMART	MYSc_2a	159	836	IPR001609	GO:0003774\|GO:0005524\|GO:0016459
Alju03g2821	1148	Gene3D	-	355	413	-	-
Alju03g2821	1148	PANTHER	MYOSIN	157	1083	-	-
Alju03g2821	1148	MobiDBLite	consensus disorder prediction	1134	1148	-	-
Alju03g2821	1148	MobiDBLite	consensus disorder prediction	1128	1148	-	-
Alju03g2821	1148	FunFam	Myosin heavy chain	355	410	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Alju03g2821	Alju-ChrAlju03	53840772	53863660	Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Alju03g2821	104	1077	Myosins gene family	AT1G54560	61.978	0.0	1289