Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Alju03g2820 | ATGGAAGGAAACTATGTGAGAAGAGATCAGAAGCATGGAGAAGAAAACGCGAGCTTGGAGGAGCAATATTCATGGGGAAGCTCATGGCCAGCAAGAAATTACTCATGTAGCTTCTGCAAGAGAGAGTTCAGGTCAGCTCAAGCTTTGGGTGGCCATATGAACGTGCACAGGAGAGATAGGGCTAGACTCAGATCAGGCATAATACCACCCTTTTGGCTTCATAATTCTGATTCATCTCTTAAACCTAACCCTATAACCTCAATGCCACCTTCTAATAACCCAACTTCCTTTTCTGCTCATGCCCCTTCTCTCACTTTGTCTTCTTGTGCGAGTGATGATAATAATAAGAAACCACCAATGCTCGTCACGTCTTCTTCTTCCAAGCTCCCTCTTCTGAGCCCTCAGAGCAGAGAAATGATCATGAATGGTGGCAACACGAGGAGTGGAATTAGATCAGTTAACGAGGAATTGAAGAAGGGGTGTGCAAAGGAGAGAGGGGTTAAGGGTTTCGAGGACATTAAGGAGGATAATATAACGTTGGAGCTGGGTTTAGGGTTGCTTCAACACCCAAAGGAGCAAATAGATTTGGAGCTTCGACTCGGCCATTTCTAG | 612 | 0.4526 | MEGNYVRRDQKHGEENASLEEQYSWGSSWPARNYSCSFCKREFRSAQALGGHMNVHRRDRARLRSGIIPPFWLHNSDSSLKPNPITSMPPSNNPTSFSAHAPSLTLSSCASDDNNKKPPMLVTSSSSKLPLLSPQSREMIMNGGNTRSGIRSVNEELKKGCAKERGVKGFEDIKEDNITLELGLGLLQHPKEQIDLELRLGHF | 203 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Alju03g2820 | 203 | SMART | c2h2final6 | 34 | 56 | IPR013087 | - | |
| Alju03g2820 | 203 | Pfam | C2H2-type zinc finger | 34 | 58 | - | - | |
| Alju03g2820 | 203 | MobiDBLite | consensus disorder prediction | 1 | 22 | - | - | |
| Alju03g2820 | 203 | PANTHER | OS07G0101800 PROTEIN | 11 | 202 | - | - | |
| Alju03g2820 | 203 | MobiDBLite | consensus disorder prediction | 106 | 149 | - | - | |
| Alju03g2820 | 203 | MobiDBLite | consensus disorder prediction | 1 | 18 | - | - | |
| Alju03g2820 | 203 | SUPERFAMILY | beta-beta-alpha zinc fingers | 31 | 60 | IPR036236 | - | |
| Alju03g2820 | 203 | ProSiteProfiles | Zinc finger C2H2 type domain profile. | 34 | 61 | IPR013087 | - | |
| Alju03g2820 | 203 | Gene3D | Classic Zinc Finger | 10 | 66 | - | - | |
| Alju03g2820 | 203 | ProSitePatterns | Zinc finger C2H2 type domain signature. | 36 | 56 | IPR013087 | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Alju03g2820 | Alju-ChrAlju03 | 53834416 | 53835027 | Tandem |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Alju03g2820 | 15 | 201 | C2H2 Transcription Factor Family | AT3G23130 | 35.417 | 4.13e-24 | 92.8 |
Transcription factors information