Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju03g2817 ATGGCTTCTTCTGCCTCTACCTCTGCTTCTCCCTGCGGGGCTTGCAAGTTCCTCCGAAGAAAGTGCGCCGCCGATTGCATATTTGCGCCTTACTTCTGCTCCGATCAAGGCCCTGCCACATTTTCCGCCATTCATAAGGTGTTTGGCGCCAGTAATGTTTCTAAATTGCTCTTCCACATCCCCGCTCGTGATCGCTGTGAGGCCGTCCTCACTATCGCTTATGAGGCCCAGGCTCGGATTAGAGACCCTGTTTATGGTTGTGTCGCTCACATTTTTGCCTTGCAACAACAGGTGGCATGCTTGCAGGCACAACTGATGCAAGTGAAGGCTCAACTAGCGCACAAGAACCTAGAAATCCATCGGGCACTAGGGAATCATCATAATATTGTGGGAGGTCATCAGGCAATGGATACTTACAACATGAACCCTATTTCTCCTCAGAGTTCTCTTGAGTCGATTGACCACAACATCGGCGATGGAATCAACGTGCAAGATATACGAAGTAGAGAGGAATTTCCATTCCCTAAAAGAAGATCTTATAACAATGATTTGGGTGAGCTCCATCAGCTTGCACTCAGGATGATGAGGAACTAG 594 0.4848 MASSASTSASPCGACKFLRRKCAADCIFAPYFCSDQGPATFSAIHKVFGASNVSKLLFHIPARDRCEAVLTIAYEAQARIRDPVYGCVAHIFALQQQVACLQAQLMQVKAQLAHKNLEIHRALGNHHNIVGGHQAMDTYNMNPISPQSSLESIDHNIGDGINVQDIRSREEFPFPKRRSYNNDLGELHQLALRMMRN 197
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju03g2817 197 PANTHER LOB DOMAIN CONTAINING PROTEIN 7 127 - -
Alju03g2817 197 Coils Coil 91 118 - -
Alju03g2817 197 Pfam Lateral organ boundaries (LOB) domain 11 109 IPR004883 -
Alju03g2817 197 ProSiteProfiles LOB domain profile. 10 112 IPR004883 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju03g2817 Alju-ChrAlju03 53816067 53816741 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju03g2817 1 197 AS2 family AT2G42430 50.602 9.99e-70 211
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Alju03g2817 LOB 1e-35 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Alju01g1781 01 14418892 14424355 Alju03g2817 03 53816067 53816741 CCT