Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju03g2808 ATGGAAGAGGGCATGAGCAGTGGAGATAAGAATGGAAGGTCAAGTGTTAATGGTGAGGTGAGATACAGAGGGATCCGGAGGAGGCCGTGGGGCAAGTTTGCGGCTGAGATCCGCGACCCGACCCGGAAGGGGACTCGGATTTGGCTTGGAACCTTCGAGACCGCCGAGGAGGCTGCCAGGGCTTACGACGCCGCCGCCTTTCATTTTAGGGGCCACCGCGCTATTCTCAATTTCCCCAACGATCATCACTCTCTTCATCCTCCCACTTCTTCACTGCCCCTGCCCTCTTCCTCTCCCTCTTCCTCCTCGAGAATTCCGCCGCCCGACGCCGACGGTGCCGTGGAGTTTGAATACTTGGACAACAACTTGCTGGATGAACTCCTCCAACAACAAGTTTACGCCCACCCTAACTTCCCCAAGTGA 423 0.5674 MEEGMSSGDKNGRSSVNGEVRYRGIRRRPWGKFAAEIRDPTRKGTRIWLGTFETAEEAARAYDAAAFHFRGHRAILNFPNDHHSLHPPTSSLPLPSSSPSSSSRIPPPDADGAVEFEYLDNNLLDELLQQQVYAHPNFPK 140
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju03g2808 140 SMART rav1_2 21 85 IPR001471 GO:0003700|GO:0006355
Alju03g2808 140 Pfam AP2 domain 21 72 IPR001471 GO:0003700|GO:0006355
Alju03g2808 140 CDD AP2 21 81 IPR001471 GO:0003700|GO:0006355
Alju03g2808 140 PANTHER DNA-BINDING DOMAIN 15 102 IPR044808 GO:0003700|GO:0009873
Alju03g2808 140 PRINTS Ethylene responsive element binding protein signature 45 61 IPR001471 GO:0003700|GO:0006355
Alju03g2808 140 PRINTS Ethylene responsive element binding protein signature 22 33 IPR001471 GO:0003700|GO:0006355
Alju03g2808 140 MobiDBLite consensus disorder prediction 78 112 - -
Alju03g2808 140 MobiDBLite consensus disorder prediction 1 20 - -
Alju03g2808 140 Gene3D AP2/ERF domain 20 80 IPR036955 GO:0003700|GO:0006355
Alju03g2808 140 SUPERFAMILY DNA-binding domain 21 80 IPR016177 GO:0003677
Alju03g2808 140 ProSiteProfiles AP2/ERF domain profile. 21 79 IPR001471 GO:0003700|GO:0006355
Alju03g2808 140 MobiDBLite consensus disorder prediction 83 105 - -
Alju03g2808 140 FunFam Ethylene-responsive transcription factor 2 20 80 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju03g2808 Alju-ChrAlju03 53737379 53737801 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju03g2808 17 131 AP2-EREBP Transcription Factor Family AT3G23230 58.678 1.68e-41 133
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Alju03g2808 AP2 1.5e-14 CL0081