Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju03g2807 ATGATTTGCCATCGTTTTCATAGTTTTGGGAGTACAATCTGTATAAAAGGAAGTGATTGGGGTGTGTCTGGTCGTTCAAAGCTAGCCACCAACATGGATTTACTCGAGTTCCAAAACCAAGAGCTATCCTCTGCAAATTCCGATTCCCCTGTTTCTGAACAATTATTCAGCTGGGAAGAGTTCTTCAACTTCGACTCCGATGAGTACTCATCCTCCCAATCCAATTCTACCGGAGGATTCGAATGTCAAGAAGTGTCGTCACAAGTGCAAGTGACAAGCAATGTTAACGCATACACAATATCATCAATACCAGAACATCAAAGTAGTGGGAGGAATAAGAAAGAGAAGAGGCCGTACAGGGGAGTGAGGAGGAGGCCGTGGGGGAAATTCGCGGCGGAGATAAGAGACTCGACGAGAAATGGGGTGAGGGTGTGGATCGGGACGTTTGATACGGCGGAGGAGGCGGCGTTGGCGTACGACCAGGCGGCTTACTGCATAAAGGGGTCGATGGCGGTGCTGAATTTCGCGGAGCAAGTGGTGAGGGAGTCGCTAGAAGGAATGGGGAGTAAGCCATGGGAGGAAGGTTCGTCTCCTGTGTTGGCCCTCAAGAGAAAGCATTCCTTGAGATCAAGGTCGTCGTCGTCGTCGTCTTCTTCGTCCAGCCATAAAAGGCCCAGACAGAATAAAAGCTCATCCATCAAGGAGACGCAGCCTCCCAACAACGTCCTCGTCTTGGAGGATTTGGGGGCTGAATATTTGGAGCATCTCTTGAGCTTGACCTCTTCTGACTTTGTTTCATTTTCATAG 807 0.4919 MICHRFHSFGSTICIKGSDWGVSGRSKLATNMDLLEFQNQELSSANSDSPVSEQLFSWEEFFNFDSDEYSSSQSNSTGGFECQEVSSQVQVTSNVNAYTISSIPEHQSSGRNKKEKRPYRGVRRRPWGKFAAEIRDSTRNGVRVWIGTFDTAEEAALAYDQAAYCIKGSMAVLNFAEQVVRESLEGMGSKPWEEGSSPVLALKRKHSLRSRSSSSSSSSSSHKRPRQNKSSSIKETQPPNNVLVLEDLGAEYLEHLLSLTSSDFVSFS 268
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju03g2807 268 Gene3D AP2/ERF domain 118 178 IPR036955 GO:0003700|GO:0006355
Alju03g2807 268 PANTHER DNA-BINDING DOMAIN 76 258 IPR044808 GO:0003700|GO:0009873
Alju03g2807 268 SMART rav1_2 118 182 IPR001471 GO:0003700|GO:0006355
Alju03g2807 268 Pfam AP2 domain 119 168 IPR001471 GO:0003700|GO:0006355
Alju03g2807 268 MobiDBLite consensus disorder prediction 211 239 - -
Alju03g2807 268 PRINTS Ethylene responsive element binding protein signature 142 158 IPR001471 GO:0003700|GO:0006355
Alju03g2807 268 PRINTS Ethylene responsive element binding protein signature 119 130 IPR001471 GO:0003700|GO:0006355
Alju03g2807 268 SUPERFAMILY DNA-binding domain 119 176 IPR016177 GO:0003677
Alju03g2807 268 CDD AP2 119 178 IPR001471 GO:0003700|GO:0006355
Alju03g2807 268 MobiDBLite consensus disorder prediction 102 122 - -
Alju03g2807 268 ProSiteProfiles AP2/ERF domain profile. 118 176 IPR001471 GO:0003700|GO:0006355
Alju03g2807 268 MobiDBLite consensus disorder prediction 203 240 - -
Alju03g2807 268 FunFam Ethylene-responsive transcription factor 2 117 177 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju03g2807 Alju-ChrAlju03 53721513 53722319 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju03g2807 86 257 AP2-EREBP Transcription Factor Family AT2G31230 52.381 3.03e-51 166
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Alju03g2807 AP2 6.6e-15 CL0081
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Alju01g1757 01 14157602 14158210 Alju03g2807 03 53721513 53722319 CCT
Alju03g2807 03 53721513 53722319 Alju03g2807 03 53721513 53722319 ECH