Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju03g2789 ATGGAAGAAGACGAAGACAGGATTTTGCTTAATAGTTTGGGCGTAGAGTCTGCCAATCACGAATGCATCGAAAGAGACGTATTATCTGAGGCACAGAATGATGTGGTGACCATTACTGATGCTGATGGGAGCTCAAAGGAAGAATCTACTCAAAAATATGAAAATGCTGATCCATCATCTATTAGTGAAGCAGAACTTTATCATAAGTTGAGGGCAGTAGATTTTGAAATCAATGCGGTTGCTTCCACTATCCAAGAAGTGAGAAATATTGACAGTAATGGAGATTGTATTGATGGTGCTGCCAACGGGGATCAAGGGACTACCAAGGATACTTCCTCCAATGATTTGAATATTCAACATGTTCTTGCTGCTGATAGGTTAGAAAGCCTAAAGAAGACAAAGGCTCAACTTGAAAAAGATCTTTCAGATTTGTTTAAGGAGAAGCCTAGCAAAAGTATTGATCGGGACAAAGAGAATGAGATCTTTAATTTGGTTAAGGAAGATCGAAGATCCAAGAGGAAGTCTAAAGAAGTTAAAAGCTTACCAAAAGTCTCAGGGAAACGACATAAAACAGTTTCATTTAATGATGATGTTGATTTTGATGCAGTTTTAGATGCTGCCTCAGCAGGCTTTGTTGAGACAGAAAGGGACCATTTGGTAAGGAAAGGGATTTTGACCCCATTTTCTAACCTGAAGGGCTTTGAGCGGCGCTTTCAACAATCAGAAGCATCTAGTAGTTATGGTGCGAGTCAAGAACAGAACACAGATTATCTTACTTCTTCTAGTCTTGAAAGAGCCGCCCGATCAATATCTGAGGCAGCCAGCGCTCGCCCAACCACCAAGTTGCTTGAGTCTGAAGATCTGCCAAAGCTTGACGCACCCACTCATCCTTTTGTCAGACTCAAAGTACCACTAAAACTTCCTCAGTCCCAAGAAAGAGAGCTAGAGAAGAAAAATGATTTGAAAAGGAAAAAAAGGCGACCTTTGCCTGGTAGGAAATGGACAAAACGTGTTTCTAGTGAGGAAATACATTCAAGAGAGACTGAGGAAGCAAGCAAATGCCTGGACCCTTCCAGTTGTGAAAATTTAGATGCTCAAGATTTTGAATGTGCTGATCATGAACCTTGTTTTATAACATTAGAAGGCGGGCTGAAAATCCCTGATAATATTTTTGATGCACTATTTGACTATCAAAAGGTTGGTGTTCAGTGGCTGTGGGAATTGCATTGCCAAAGAGCTGGTGGAATTATTGGCGATGAGATGGGTCTTGGTAAAACCATCCAGGTTTTATCTTTTCTTGGTGCATTGCATTTTAGTGGTATGTACAAACCAAGCATTATCATTTGTCCTGTGACCCTCATGCGACAGTGGAAAAGGGAAGTTCAAAAATGGTACCCAAAATTTCATGTAGAGCTTTTACATGATTCTGCACGAGATCCTGATGTTAGAAAGAAGCAATCCAAATGTGATGAATCAGACTATGATAGTAATAGTTCAAGTGACAGTGACTATGAGACCAATATTCAATCAAATAGCACAAGAAAATGGGAATCCCTGATAAGTCGTGTAATGAGAACAGAATCTGGATTGCTTATCACAACATATGAGCAGCTCAGAATATTGAGGGACCTGTTACTCGACATTGAATGGGGTTATGCAATTCTTGATGAAGGACACAGAATAAGGAATCCAAATGCTGAAATTACTCTAGTTTGCAAACAGCTACAGACTGTACACCGCGTCATAATGACTGGCTCACCTATACAGAACAAACTGACTGAACTGTGGTCATTGTTTGATTTTGTTTTCCCTGGAAAGTTGGGTGTTTTGCCTATATTTGAAGCCGAGTTTGCTGTTCCTATAGCACTGGGTGGATATGCAAATGCTTCACCATTACAAGTATCAACAGCATACAGGTGTGCTGTGATGCTTCGTGATTTGATCATGCCTTATCTTCTTCGGCGGATGAAAGCAGATGTGGATGCCCACCTTCCAAAGAAAACTGAGCATGTTTTATTTTGTAGTCTTACTACTGAGCAAGTATCTGCTTATAGAGCATTTTTGGCAAGCTCTGAAGTGGAGCAAATCTTGGATGGACGGAAGAATTCTCTTTATGGAATCGACGTAATGCGTAAGATTTGCAACCACCCTGACTTGCTTGAAAGGGAGCATGCATTCAGAAATCCAGACTATGGAAATCCAGAACGCAGTGGCAAAATGAAAGTTGTGGCACAGGTTCTTAATGTTTGGAAGGAACAGGGTCATCGAGTTCTTTTTTTTACTCAAACCCAACAAATGCTTGACATTATTGAAAACTTTTTGACCACTTCTGGTCGTAATTACCGGAGAATGGATGGAGCCACTCCCATAAAACAAAGGATGGCTTTAATTGATGAATTTAATGAATCAAGTGAAGTATTTATATTCATTTTAACAACAAAAGTTGGGGGCTTGGGCACGAATCTTACTGGTGCAGACAGGGTGATTATCTTTGACCCTGATTGGAATCCTTCAACTGACGTTCAGGCCAGAGAACGAGCTTGGCGAATTGGTCAGACACGAGATGTGACAGTGTATAGGTTGATCACGCGTGGAACTATAGAGGAGAAAGTGTATCACCGTCAGATTTACAAACATTTTCTTACCAATAAGGTATTGAAGAACCCACAGCAGAAAAGATTCTTTAAAGCTCGAGATATGAAAGATCTTTTTACATTGAATGTGGATGACAAAAGTGGTTCAACTGAAACGTCAACTATTTTCAGTCAAATTTCTGAAGATGTAAATATTGTTGGGGCACATGAAGATAAGCAGGATAAGCGTAAACGCCCCCAAACTGCTGAACCAGGTTCTGATGATGTTGTAGTTAATAGGGATGGCAGGTCAAAAACAAGATCAGTCAAGGGAAAGGGAAAAGAGGAAACGGATTGTCTTGATGAAGCAGATGAGGAAACAAATATATTGAAAAGTCTTTTTGATGCCCATGGGTTACATAGCGCTGTGAACCATGATTTGATCATGAATGCCAATGATGAGGAAAAGATGAGGCTGGAGAAGCAAGCTTCCCAGGTTGCACAGAGAGCCGCAGAAGCTTTACGTCAGTCTCAAAAACTCCGAAGCCGTGACAGCATCGCTGTTCCTACATGGACAGGAAGGTCAGGAACTGCTGGTGCACCATCCTCTTTTCGTCGAAAGTTTGGTTTAACCGTGAATTCCCAGTTGGTGAGTAATTGCAAAGAATATGGTGATGGAACTAGAAAATTAAATGGATCTGCTGCTGGGGCATCATCCGGTAAGGCATTATCTTCTGCTGAACTTTTGGCTCGAATCCAGGGTAACCAAGAAAAAGCCATTGGTGCTGGGCTGGAACATCAGTTTGGTGTGGCCGTTTCTAATCAAGCAAGATCTGTGGATGTTGGATCCTCTAGGGCTTCTAGGAAGGTAGATGGAGTGCAACCTGAGGTGTTGATTCGGCAAATCTGTACATTTCTACAACAGAGAGGTGGTCGTTCTGATTCATCCAGCATAGTCCAGCATTTTAAGGACAGGATACCCTCAACAGATCTTGCCCTGTTCAAGAATCTGTTAAAGGAAATAGCAACTCTGGAAAAGGGACCAATTGGGTCACATTGGATTCTGAAGCCTGACTATCAAGAATAG 3660 0.4128 MEEDEDRILLNSLGVESANHECIERDVLSEAQNDVVTITDADGSSKEESTQKYENADPSSISEAELYHKLRAVDFEINAVASTIQEVRNIDSNGDCIDGAANGDQGTTKDTSSNDLNIQHVLAADRLESLKKTKAQLEKDLSDLFKEKPSKSIDRDKENEIFNLVKEDRRSKRKSKEVKSLPKVSGKRHKTVSFNDDVDFDAVLDAASAGFVETERDHLVRKGILTPFSNLKGFERRFQQSEASSSYGASQEQNTDYLTSSSLERAARSISEAASARPTTKLLESEDLPKLDAPTHPFVRLKVPLKLPQSQERELEKKNDLKRKKRRPLPGRKWTKRVSSEEIHSRETEEASKCLDPSSCENLDAQDFECADHEPCFITLEGGLKIPDNIFDALFDYQKVGVQWLWELHCQRAGGIIGDEMGLGKTIQVLSFLGALHFSGMYKPSIIICPVTLMRQWKREVQKWYPKFHVELLHDSARDPDVRKKQSKCDESDYDSNSSSDSDYETNIQSNSTRKWESLISRVMRTESGLLITTYEQLRILRDLLLDIEWGYAILDEGHRIRNPNAEITLVCKQLQTVHRVIMTGSPIQNKLTELWSLFDFVFPGKLGVLPIFEAEFAVPIALGGYANASPLQVSTAYRCAVMLRDLIMPYLLRRMKADVDAHLPKKTEHVLFCSLTTEQVSAYRAFLASSEVEQILDGRKNSLYGIDVMRKICNHPDLLEREHAFRNPDYGNPERSGKMKVVAQVLNVWKEQGHRVLFFTQTQQMLDIIENFLTTSGRNYRRMDGATPIKQRMALIDEFNESSEVFIFILTTKVGGLGTNLTGADRVIIFDPDWNPSTDVQARERAWRIGQTRDVTVYRLITRGTIEEKVYHRQIYKHFLTNKVLKNPQQKRFFKARDMKDLFTLNVDDKSGSTETSTIFSQISEDVNIVGAHEDKQDKRKRPQTAEPGSDDVVVNRDGRSKTRSVKGKGKEETDCLDEADEETNILKSLFDAHGLHSAVNHDLIMNANDEEKMRLEKQASQVAQRAAEALRQSQKLRSRDSIAVPTWTGRSGTAGAPSSFRRKFGLTVNSQLVSNCKEYGDGTRKLNGSAAGASSGKALSSAELLARIQGNQEKAIGAGLEHQFGVAVSNQARSVDVGSSRASRKVDGVQPEVLIRQICTFLQQRGGRSDSSSIVQHFKDRIPSTDLALFKNLLKEIATLEKGPIGSHWILKPDYQE 1219
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju03g2789 1219 FunFam DNA excision repair protein ERCC-6 662 940 - -
Alju03g2789 1219 Coils Coil 1014 1034 - -
Alju03g2789 1219 Coils Coil 120 147 - -
Alju03g2789 1219 CDD SF2_C_SNF 737 862 - -
Alju03g2789 1219 MobiDBLite consensus disorder prediction 38 59 - -
Alju03g2789 1219 CDD DEXHc_ERCC6 394 604 - -
Alju03g2789 1219 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 742 901 IPR001650 -
Alju03g2789 1219 PANTHER SNF2/RAD54 FAMILY MEMBER 157 1201 - -
Alju03g2789 1219 SMART helicmild6 768 851 IPR001650 -
Alju03g2789 1219 FunFam Protein CHROMATIN REMODELING 8 372 654 - -
Alju03g2789 1219 MobiDBLite consensus disorder prediction 334 351 - -
Alju03g2789 1219 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 657 916 IPR027417 -
Alju03g2789 1219 MobiDBLite consensus disorder prediction 935 975 - -
Alju03g2789 1219 CDD CSB_WHD 1149 1218 - -
Alju03g2789 1219 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 406 605 IPR014001 -
Alju03g2789 1219 Pfam Helicase conserved C-terminal domain 744 851 IPR001650 -
Alju03g2789 1219 MobiDBLite consensus disorder prediction 483 507 - -
Alju03g2789 1219 Gene3D - 661 948 IPR027417 -
Alju03g2789 1219 Gene3D - 377 654 IPR038718 -
Alju03g2789 1219 SMART ultradead3 390 622 IPR014001 -
Alju03g2789 1219 MobiDBLite consensus disorder prediction 310 351 - -
Alju03g2789 1219 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 376 655 IPR027417 -
Alju03g2789 1219 MobiDBLite consensus disorder prediction 269 289 - -
Alju03g2789 1219 Pfam SNF2-related domain 397 719 IPR000330 GO:0005524|GO:0140658
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju03g2789 Alju-ChrAlju03 53581634 53587854 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju03g2789 694 905 RAD5 or RAD16-like Gene Family AT5G22750 30.233 1.52e-24 109
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Alju03g2789 SNF2_N 1.6e-61 CL0023
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Alju03g2789 03 53581634 53587854 Alju03g2789 03 53581634 53587854 ECH