Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju03g2707 ATGGATCGCGTAGCATCAGTTAAGCAACAAAGCAGCTTCGAAGACATAGCAAAGTGTCTAATGATGCTGTCTCATCATCATGTCGGAGACAACAACGTTATGAGATCAAAGCCTCAAAACGGCGGCGTAGGGTGTGTGGAATACGAATGCAAAACATGCAAACGCAAGTTCTCGTCGTTTCAGGCTCTTGGAGGGCATAGGGCTAGCCACAAGAGATCAAGGCTGGAGGGAGATCAAGACCTGAGAGAGCAGGCTAAGTCTCTGAGCTTAGAACCTTGCAAACCTAAAGTTCATGAATGTTCCATTTGTGGTCTAGAGTTCTCGCTGGGCCAGGCACTGGGTGGCCACATGAGAAGACACAGATCAGCCACCCTAAACGACGACGTCGTCCACCATCGCTTCTCTTCCAAAGTGCCAGTTTTGAAGAGATCCAATAGCAAGAGGGTTGAATTCTTGGACCTTAACTTGACCCCTCTTGAGAATGACCTGAAGCTCTTGTTTGGCAGCAAGGCACCTAAGGTCGGAGCCTTCGTCGTCTGA 540 0.4907 MDRVASVKQQSSFEDIAKCLMMLSHHHVGDNNVMRSKPQNGGVGCVEYECKTCKRKFSSFQALGGHRASHKRSRLEGDQDLREQAKSLSLEPCKPKVHECSICGLEFSLGQALGGHMRRHRSATLNDDVVHHRFSSKVPVLKRSNSKRVEFLDLNLTPLENDLKLLFGSKAPKVGAFVV 179
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju03g2707 179 SUPERFAMILY beta-beta-alpha zinc fingers 48 120 IPR036236 -
Alju03g2707 179 PANTHER ZINC FINGER PROTEIN ZAT5 8 162 - -
Alju03g2707 179 SMART c2h2final6 48 70 IPR013087 -
Alju03g2707 179 SMART c2h2final6 98 120 IPR013087 -
Alju03g2707 179 ProSitePatterns Zinc finger C2H2 type domain signature. 50 70 IPR013087 -
Alju03g2707 179 ProSitePatterns Zinc finger C2H2 type domain signature. 100 120 IPR013087 -
Alju03g2707 179 ProSiteProfiles Zinc finger C2H2 type domain profile. 98 125 IPR013087 -
Alju03g2707 179 ProSiteProfiles Zinc finger C2H2 type domain profile. 48 75 IPR013087 -
Alju03g2707 179 Gene3D Classic Zinc Finger 45 120 - -
Alju03g2707 179 Pfam C2H2-type zinc finger 97 122 - -
Alju03g2707 179 Pfam C2H2-type zinc finger 48 72 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju03g2707 Alju-ChrAlju03 53000453 53000992 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju03g2707 8 174 C2H2 Transcription Factor Family AT2G37430 46.369 6.46e-41 134
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Alju03g2707 zf-C2H2_6 1.8e-10 CL0361