Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju03g2697 ATGGGGAACTCAGTCGGCCATCGCAGACACCGTAACTCCGCTCCTCACTACCCCACACCTCCCTCCTATATATATGCTCCTCCGCCTCATCTTTCAACCCCACTTTCAGCTCCTCCCTCTCACGACGGCCATTTCCTCGCCGGAATGAGCTCTTTACCTTATTCCCACGTCGACTCCACTTTGCGTGCTCTCGCCGCCCAAGCTGAAGGCTTTGGTCGATGTGCCATCGGTGGCCTTCATGGTCCCCTTTATCACGTTACTACCTTGGCAGATGATGGACCAGGATCACTACGTGATGGTTGTCGCAGAAAAGAACCATTGTGGATTGTGTTTGAGGTTTCTGGAATTATTCATCTTTCATCTTACTTGAGCGTGTCATCTTACAAGACTATTGATGGCCGAGGTCAAAGGATTAAACTCACTGGAAAGGGTTTGCGGCTGAAGGAATGTGAACATGTAATAATTTGCAACTTAGAGTTGGAAGGTGGTAGAGGGCCTGATGTGGATGGCATTCAGATCAAGCCTAATTCAAAGCACATATGGATAGACCGTTGCAGCCTGCGAGATTTTGATGATGGACTGATAGATATTACACGAGAAAGCACTGATATTACTATTTCTAGATGTCATTTTTCTCAGCATGACAAAACGATGCTTATTGGGGCAGATCCCTCGCACACTGGTGATAGATGCATGAGGGTGACTATTCACCACTGTTTCTTTGATGGGACACGACAGCGGCATCCTCGTGTTAGATATGCAAAAGTACATCTGTACAATAATTACACCAGAAATTGGGGCATATATGCTGTTTGTGCAAGTGTGGAATCACAGATATTCTCACAACACAACATCTATGAAGCCGGGCAAAAGAAAGTAGCATTTAAGTATCTCTCTGAAAAGGCAGGAGACAAGGAAGCAGAAGCAAGTGGTCACATATGGTCTGAAGGAGACATGTTCGTAAGTGGAACTCAGGCAGGCTTAATGAGGGAGAGCGTGGGAGCTCCCACATTTCATCCTAGTCAGCACTATACGACGTGGACGGTGGCACCTCCGTCACAAGATCTCAAGCAGCTTCTTCAGCACTGCACTGGATGGCAATGTGTTGCACGCCCACCAGATCAACCCCTGTCCGCATAG 1140 0.4754 MGNSVGHRRHRNSAPHYPTPPSYIYAPPPHLSTPLSAPPSHDGHFLAGMSSLPYSHVDSTLRALAAQAEGFGRCAIGGLHGPLYHVTTLADDGPGSLRDGCRRKEPLWIVFEVSGIIHLSSYLSVSSYKTIDGRGQRIKLTGKGLRLKECEHVIICNLELEGGRGPDVDGIQIKPNSKHIWIDRCSLRDFDDGLIDITRESTDITISRCHFSQHDKTMLIGADPSHTGDRCMRVTIHHCFFDGTRQRHPRVRYAKVHLYNNYTRNWGIYAVCASVESQIFSQHNIYEAGQKKVAFKYLSEKAGDKEAEASGHIWSEGDMFVSGTQAGLMRESVGAPTFHPSQHYTTWTVAPPSQDLKQLLQHCTGWQCVARPPDQPLSA 379
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju03g2697 379 SUPERFAMILY Pectin lyase-like 67 369 IPR011050 -
Alju03g2697 379 Gene3D - 53 363 IPR012334 -
Alju03g2697 379 PANTHER PECTATE LYASE 18-RELATED 56 333 IPR045032 GO:0030570
Alju03g2697 379 PRINTS Pollen allergen Amb family signature 122 138 IPR018082 -
Alju03g2697 379 PRINTS Pollen allergen Amb family signature 269 288 IPR018082 -
Alju03g2697 379 PRINTS Pollen allergen Amb family signature 67 84 IPR018082 -
Alju03g2697 379 MobiDBLite consensus disorder prediction 1 23 - -
Alju03g2697 379 SMART amb_all 114 292 IPR002022 -
Alju03g2697 379 Pfam Pectate lyase 123 285 IPR002022 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju03g2697 Alju-ChrAlju03 52933203 52935844 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju03g2697 89 374 Polysaccharide Lyase AT3G55140 75.524 6.62e-167 467
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Alju03g2697 03 52933203 52935844 Alju03g2697 03 52933203 52935844 ECH