Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju03g2666 ATGGCTGAAGCTCCGGCCAGTCCAGGCGGTGGCAGCCCAGAGAGCGGTGAGCATAGCCCTCGCTCTAATGTCCGCGAGCAGGACAGGTTCCTTCCCATCGCCAACATCAGCCGAATTATGAAAAAGGCACTCCCCGCTAATGGAAAAATAGCCAAGGACGCCAAGGAGACTGTCCAGGAATGTGTTTCAGAGTTCATCAGCTTTATCACCAGCGAGGCGAGTGATAAGTGTCAGAGAGAGAAAAGGAAGACAATTAATGGTGATGATTTGCTTTGGGCGATGGCTACTCTAGGTTTTGAGGATTATATTGATCCCCTGAAGGTTTACCTGGCCAGATACAGAGAGGGCGATACCAAGAGTTCTGCAAAGGGCGGAGATGCATCGGCCAAGAAAGATGCCCAACCTAGTCCTAATGCTCAGCTTACCCATCAAGGTTCTTTTCCCCAAGGTGTTAATTACACAAATTCTCAGGCTCAACATATGATGGTTCATACTCAGGGTCCAGAGTAG 510 0.4961 MAEAPASPGGGSPESGEHSPRSNVREQDRFLPIANISRIMKKALPANGKIAKDAKETVQECVSEFISFITSEASDKCQREKRKTINGDDLLWAMATLGFEDYIDPLKVYLARYREGDTKSSAKGGDASAKKDAQPSPNAQLTHQGSFPQGVNYTNSQAQHMMVHTQGPE 169
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju03g2666 169 PANTHER CCAAT-BINDING TRANSCRIPTION FACTOR-RELATED 17 154 IPR027113 GO:0001228|GO:0006355|GO:0016602
Alju03g2666 169 SUPERFAMILY Histone-fold 27 129 IPR009072 GO:0046982
Alju03g2666 169 PRINTS CCAAT-binding transcription factor subunit A signature 77 95 - -
Alju03g2666 169 PRINTS CCAAT-binding transcription factor subunit A signature 58 76 - -
Alju03g2666 169 PRINTS CCAAT-binding transcription factor subunit A signature 96 114 - -
Alju03g2666 169 ProSitePatterns NF-YB/HAP3 subunit signature. 61 77 IPR003956 GO:0005634|GO:0006355|GO:0043565
Alju03g2666 169 MobiDBLite consensus disorder prediction 133 163 - -
Alju03g2666 169 FunFam Nuclear transcription factor Y subunit B-3 19 143 - -
Alju03g2666 169 Gene3D Histone, subunit A 17 160 IPR009072 GO:0046982
Alju03g2666 169 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 30 94 IPR003958 -
Alju03g2666 169 MobiDBLite consensus disorder prediction 117 169 - -
Alju03g2666 169 MobiDBLite consensus disorder prediction 1 28 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju03g2666 Alju-ChrAlju03 52726504 52729011 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju03g2666 17 169 CCAAT-HAP3 Transcription Factor Family AT3G53340 76.730 2.73e-83 241
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YB Alju03g2666 CBFD_NFYB_HMF 7.4e-28 CL0012