Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju03g2653 ATGACCAACGGCTCTTCTTTTTTGTTTTCCGGCATTCGCTTCGATAAAAAAAGGTTCGGCAGCGACATTGCCAAGTTCGAGAGAAAAGAAAACGACCATTTCTTGAAGGTTTCGAGCTCGGTTGAAATTGAGAAAGCAGAACCAGTTGATGGAAAAGCGCCTGCTAAGAAGAGAAAGCGGAAGGGAGTGGTTTCAGAAACAGTTGAGGGATTTAATGTCTTTAAGAAGTCCAAATCAGAGGCACTTCAACCTACAGATCAAGATAAAGCTGCGGCTGAGTCCGTTCAGCAGACAAAAGAACAAAATAGGCAACTTGAGCGGGATGCTCTATTCAGGAAGAGGCACAACATTCATGTGTCTGGGTACAATATCCCATCCCCGCTTCAAAATTTTGAGGAGTTGAGCTCAAGATATAAATGTGAACCATATATGTTACGCAACTTGGCAGAACTCGGATTCAGAGAACCTACCCCAATCCAAAGACAAGCTATTCCTGTTCTTTTACATGATCGTGAATGCTTTGCCTGTGCCCCAACTGGCTCTGGGAAAACCCTGGCATTTGTGTGTCCCATGCTTATAAAGCTTAAGGATCCTTCAAAAAATGGCATTCGAGCTGTTATCCTTTGTCCCACTCGTGAATTATCTTCCCAAACTTACAGAGAGTGCAAAAAGCTGGCCAAAGGAAAAAAGTTCCGCATTAAGTTAATGACTAAAGAGCTAGCAAGAAATGGTGATTTTACTAAATTTTCATGTGATATGCTTATATCAACACCACTTCGATTACACTTGGCCGTCCAGAGGAAAAAGGTTGACCTTAGCAGAGTTGAGTATCTTGTTCTGGATGAATCTGATAAGCTTTTTGAGCTTGGGTTATTTGAGCAGATTGATTATGTTATCCAAGCGTGTTCAAACCCTTCAATAATACGCACACTTTTCAGTGCCACTTTACCTGATTCCGTTGAGGATCGTGCTCGGGAGCTTATGCATGATGCCATTAGAGTTATTGTTGGCAGAAAGAATATGGCTTCTGAAACAATAAAGCAAAAATTAGTTTTTGCTGGAAGTGAAGAGGGAAAACTTATGGCAATTCGCCAAAGCTTTGCAGAGAGTTTAAATCCCCCTGTATTGGTCTTTGTCCAAAGCAAGGAGCGAGCAAAAGAGCTCTATGGTGAACTACAATTTGACAACCTCAGAGTTGGTGTTATCCATTCTGATTTGTCTCAAAAGGAGCGAGAAGATGCTGTTGATAATTTCAGAGCTGGCAAAACATGGGTTTTGATTGCTACTGATGTGGTTGCTCGAGGCATGGATTTCAAAGCTGTGAAATGTGTGATTAACTATGATTTTCCAGATTCTGCTGCTGCTTACATCCATAGGATCGGTCGTTCTGGGAGAGCAGGGAGGGCTGGAGAAGCTATAACATTTTATTCGGAGGAAGACATGCCCTTGCTGCGTAATATAGCCAATCTGATGGCAGCATCAGGTTGTGAAGTTCCACCTTTTCTCCTGGAGCTGCCCAAAAAGAAGTGGAAGAAACACCGCCCCAAAAGAGATTCTATCTCTACCAAACCCAAAGTATAA 1581 0.4238 MTNGSSFLFSGIRFDKKRFGSDIAKFERKENDHFLKVSSSVEIEKAEPVDGKAPAKKRKRKGVVSETVEGFNVFKKSKSEALQPTDQDKAAAESVQQTKEQNRQLERDALFRKRHNIHVSGYNIPSPLQNFEELSSRYKCEPYMLRNLAELGFREPTPIQRQAIPVLLHDRECFACAPTGSGKTLAFVCPMLIKLKDPSKNGIRAVILCPTRELSSQTYRECKKLAKGKKFRIKLMTKELARNGDFTKFSCDMLISTPLRLHLAVQRKKVDLSRVEYLVLDESDKLFELGLFEQIDYVIQACSNPSIIRTLFSATLPDSVEDRARELMHDAIRVIVGRKNMASETIKQKLVFAGSEEGKLMAIRQSFAESLNPPVLVFVQSKERAKELYGELQFDNLRVGVIHSDLSQKEREDAVDNFRAGKTWVLIATDVVARGMDFKAVKCVINYDFPDSAAAYIHRIGRSGRAGRAGEAITFYSEEDMPLLRNIANLMAASGCEVPPFLLELPKKKWKKHRPKRDSISTKPKV 526
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju03g2653 526 Gene3D - 108 341 IPR027417 -
Alju03g2653 526 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 133 161 IPR014014 GO:0003724
Alju03g2653 526 CDD DEADc_DDX52 145 337 IPR044764 GO:0003724|GO:0005524|GO:0030490
Alju03g2653 526 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 345 506 IPR001650 -
Alju03g2653 526 SMART helicmild6 386 467 IPR001650 -
Alju03g2653 526 MobiDBLite consensus disorder prediction 45 64 - -
Alju03g2653 526 Pfam DEAD/DEAH box helicase 157 321 IPR011545 GO:0003676|GO:0005524
Alju03g2653 526 Coils Coil 88 108 - -
Alju03g2653 526 CDD SF2_C_DEAD 346 476 - -
Alju03g2653 526 PANTHER ATP-DEPENDENT RNA HELICASE RHLE-RELATED 85 494 - -
Alju03g2653 526 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 201 487 IPR027417 -
Alju03g2653 526 Gene3D - 342 521 IPR027417 -
Alju03g2653 526 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 164 334 IPR014001 -
Alju03g2653 526 SMART ultradead3 152 349 IPR014001 -
Alju03g2653 526 MobiDBLite consensus disorder prediction 79 102 - -
Alju03g2653 526 Pfam Helicase conserved C-terminal domain 369 467 IPR001650 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju03g2653 Alju-ChrAlju03 52664080 52668134 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju03g2653 127 505 Eukaryotic Initiation Factors Gene Family AT3G19760 31.234 7.25e-58 196