Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju03g2640 ATGCATTTGTTATGGCTTCAATCTCATTCTGGTGAAGCCTTGAAATTATCCAAATTCCCATGTTTGATTTATTATCGTTCTTTCTGTTCGGTTCTCAATATGCAGATCTTCGTGAAAACCTTGACCGGCAAGACAATCACCCTCGAGGTGGAAGGCTCCGATACTATTGACAACGTGAAGGCGAAGATCCAAGATAAGGAGGGTATCCCTCCGGATCAGCAAAGACTCATCTTCGCCGGCAAGCAGTTGGAGGACGGCCGCACTCTCGCCGATTACAACATTCAAAAAGAGTCGACGCTTCACCTCGTTCTCCGATTGAGGGGCGGTATGCAGATCTTCGTCAAAACCCTAACCGGAAAGACGATCACTCTTGAGGTGGAGAGCTCGGACACCATAGATAATGTTAAAGCCAAGATTCAAGATAAGGAAGGCATTCCCCCGGATCAGCAGAGGCTGATCTTTGCGGGCAAGCAGTTGGAAGATGGCCGCACCCTGGCCGATTACAACATACAGAAAGAATCGACACTTCACCTCGTCCTCCGATTGAGGGGCGGCATGCAGATCTTCGTCAAGACCTTGACGGGAAAGACCATTACGTTGGAGGTTGAGAGTTCCGATACAATCGACAACGTGAAGGCCAAGATCCAGGATAAAGAAGGTATTCCCCCGGATCAGCAGAGACTCGTCTTCGCTGGGAAACAATTGGAAGAAGGCCGTACACTCGCTGATTACAATATCCAGAAGGAGTCTACGCTTCACCTTGTGCTTCGTCTTCGCGGAGGAATGCAGATTTTCGTCAAGACCCTGACGGGGAAAACCATCACTTTGGAAGTTGAGAGTTCCGACACCATCGACAATGTGAAGGCAAAGATCCAGGACAAGGAAGGTATCCCGCCTGATCAGCAGCGCCTGATCTTCGCAGGAAAGCAATTGGAGGACGGGAGGACCCTTGCGGATTATAATATCCAGAAGGAGTCAACCCTTCATCTGGTGCTTCGTCTGCGTGGAGGCATGCAGATTTTTGTGAAGACGCTCACCGGAAAGACTATCACTCTGGAAGTCGAGAGCTCGGATACAATTGATAATGTGAAGGCCAAAATCCAGGATAAGGAGGGGATTCCGCCGGACCAGCAGCGTCTCATCTTCGCTGGGAAACAGCTTGAGGACGGACGCACACTTGCAGATTATAACATTCAGAAGGAATCGACCCTTCATCTTGTCCTCCGTCTTCGCGGTGGGGATATCTAA 1248 0.4968 MHLLWLQSHSGEALKLSKFPCLIYYRSFCSVLNMQIFVKTLTGKTITLEVEGSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLVFAGKQLEEGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGDI 415
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju03g2640 415 ProSitePatterns Ubiquitin domain signature. 212 237 IPR019954 -
Alju03g2640 415 ProSiteProfiles Ubiquitin domain profile. 110 185 IPR000626 GO:0005515
Alju03g2640 415 SUPERFAMILY Ubiquitin-like 336 413 IPR029071 -
Alju03g2640 415 ProSiteProfiles Ubiquitin domain profile. 338 413 IPR000626 GO:0005515
Alju03g2640 415 ProSiteProfiles Ubiquitin domain profile. 262 337 IPR000626 GO:0005515
Alju03g2640 415 FunFam Polyubiquitin 3 262 337 - -
Alju03g2640 415 PRINTS Ubiquitin signature 162 183 IPR019956 -
Alju03g2640 415 PRINTS Ubiquitin signature 120 140 IPR019956 -
Alju03g2640 415 PRINTS Ubiquitin signature 141 161 IPR019956 -
Alju03g2640 415 SUPERFAMILY Ubiquitin-like 185 261 IPR029071 -
Alju03g2640 415 ProSiteProfiles Ubiquitin domain profile. 34 109 IPR000626 GO:0005515
Alju03g2640 415 Gene3D - 186 261 - -
Alju03g2640 415 Gene3D - 110 185 - -
Alju03g2640 415 Gene3D - 262 337 - -
Alju03g2640 415 Gene3D - 30 109 - -
Alju03g2640 415 Gene3D - 338 415 - -
Alju03g2640 415 FunFam Polyubiquitin 3 34 109 - -
Alju03g2640 415 CDD Ubl_ubiquitin 262 337 - -
Alju03g2640 415 PANTHER UBIQUITIN 262 339 - -
Alju03g2640 415 SMART ubq_7 34 105 IPR000626 GO:0005515
Alju03g2640 415 SMART ubq_7 262 333 IPR000626 GO:0005515
Alju03g2640 415 SMART ubq_7 338 409 IPR000626 GO:0005515
Alju03g2640 415 SMART ubq_7 186 257 IPR000626 GO:0005515
Alju03g2640 415 SMART ubq_7 110 181 IPR000626 GO:0005515
Alju03g2640 415 ProSitePatterns Ubiquitin domain signature. 364 389 IPR019954 -
Alju03g2640 415 CDD Ubl_ubiquitin 110 185 - -
Alju03g2640 415 FunFam Polyubiquitin 3 110 185 - -
Alju03g2640 415 ProSiteProfiles Ubiquitin domain profile. 186 261 IPR000626 GO:0005515
Alju03g2640 415 SUPERFAMILY Ubiquitin-like 261 337 IPR029071 -
Alju03g2640 415 CDD Ubl_ubiquitin 338 413 - -
Alju03g2640 415 ProSitePatterns Ubiquitin domain signature. 136 161 IPR019954 -
Alju03g2640 415 FunFam Polyubiquitin 3 338 413 - -
Alju03g2640 415 CDD Ubl_ubiquitin 186 261 - -
Alju03g2640 415 ProSitePatterns Ubiquitin domain signature. 60 85 IPR019954 -
Alju03g2640 415 SUPERFAMILY Ubiquitin-like 33 109 IPR029071 -
Alju03g2640 415 Pfam Ubiquitin family 112 183 IPR000626 GO:0005515
Alju03g2640 415 Pfam Ubiquitin family 188 259 IPR000626 GO:0005515
Alju03g2640 415 Pfam Ubiquitin family 36 107 IPR000626 GO:0005515
Alju03g2640 415 Pfam Ubiquitin family 340 411 IPR000626 GO:0005515
Alju03g2640 415 Pfam Ubiquitin family 264 335 IPR000626 GO:0005515
Alju03g2640 415 ProSitePatterns Ubiquitin domain signature. 288 313 IPR019954 -
Alju03g2640 415 FunFam Polyubiquitin 3 186 261 - -
Alju03g2640 415 SUPERFAMILY Ubiquitin-like 109 185 IPR029071 -
Alju03g2640 415 CDD Ubl_ubiquitin 34 109 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju03g2640 Alju-ChrAlju03 52586224 52588629 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju03g2640 338 415 Cytoplasmic Ribosomal Protein Gene Family AT3G52590 98.718 4.51e-47 156