Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju03g2634 ATGATGTCTGGTGATCCTTTCTCCTTATCCACTTCCATCGGAGGCTTTCCTCCCCAACAAAACCCAAACCCAAACCCTAACCCTAGACCTAATCCCAAGAAGAAAAGGAATCTCCCAGGCACACCAGATCCAGATGCGGAGGTCATGGCCCTGTCACCGAAAACACTCATGGCAACCAACAGGTTTATTTGCGAGATATGCAACAAAGGGTTTCAGAGAGACCAGAACCTTCAGCTTCACCGGAGGGGTCACAACCTGCCATGGAAGTTACGACAAAGGTCCAACAAAGAAGTTCGAAAGAAGGTTTACATATGCCCGGAGAAGACGTGCGTCCACCACGACCCCTCCAGAGCACTCGGCGACCTCACCGGCATCAAGAAGCACTTTAGCAGAAAACACGGCGAGAAGAAATGGAAGTGTGACAAGTGTTCCAAGAAATATGCAGTCCAATCTGACTGGAAAGCTCACATGAAGACCTGTGGTACAAGAGAATACAAGTGCGATTGTGGCAACCTATTCTCCAGAAAGGACAGCTTCATTACACACAGAGCTTTCTGTGACGCCTTAGCGGAAGAGAGTGCCAGGCTCACCTCGGTTGCTCCAACAAATCTGAAATTCAAGAACGAAGGGAATAGTAATGCCATGAGCTCAGCACAACCTAGTCAGCTGGGGCTTGAAAACAACGCAGACGTAATTTCTCAATTCGGCTCGCATGGATTTCGTGCAGATTTTAATGCAAGCCTATCCATGTGGTTGAACCAGGGAAATAATAATACTAATGGTCTGGACGTTGGAGGGCTATACGGTTCTTCAGGTTTAGGTAGTGAGCATATGGCACAAATGACGACCCAAGCTAGTAATAATGCTTTTGGGTCTTGTAATTTTGGAATGCCTGCTTCGAATTCAACAACAAACGCAGGTCTGTTACTATCAAGTGGGAAGAGGGGTGAAGCAATGTCAAAGCCAGCTTCTCCCATGTCAGCAACAGCTTTACTTCAGAAAGCAGCTCAGATGGGTTCCACCAGAAGCACCAGCAGCAACAACAACAACAACAATCCCTCTATTTTCAGTGGCGCTTTGGGAGTTATGTCTTCTTCTTCTAATTCCCACACGACCACTAATCTCAATGATAACAACACCACCACCAACAATCCCCAGAATTTTAGTTCAGCTAGCAGTGCTGAACCAATTCTAGCAGATAACAACTTTAGTACTGATAATCTTGACCAGCTCTTGATGCAGACCAGTGCAAAGCAAAGCGAACAACAAGTGCAATTGAAGCTTTACCCAGGGGGTTCTTCATCAGAACATAGTTTGACGAGAGATTTTCTCGGCATGGGCGGTGGCGGTGCCGCCGGTCCTCCTCGTCCGTTTTTGCCGCAAGAACTGGCGAAGTTTGCGTCCATTGGGTCACCCATGGGTTTAACCCAATTTACTGCAAACCATTGA 1449 0.472 MMSGDPFSLSTSIGGFPPQQNPNPNPNPRPNPKKKRNLPGTPDPDAEVMALSPKTLMATNRFICEICNKGFQRDQNLQLHRRGHNLPWKLRQRSNKEVRKKVYICPEKTCVHHDPSRALGDLTGIKKHFSRKHGEKKWKCDKCSKKYAVQSDWKAHMKTCGTREYKCDCGNLFSRKDSFITHRAFCDALAEESARLTSVAPTNLKFKNEGNSNAMSSAQPSQLGLENNADVISQFGSHGFRADFNASLSMWLNQGNNNTNGLDVGGLYGSSGLGSEHMAQMTTQASNNAFGSCNFGMPASNSTTNAGLLLSSGKRGEAMSKPASPMSATALLQKAAQMGSTRSTSSNNNNNNPSIFSGALGVMSSSSNSHTTTNLNDNNTTTNNPQNFSSASSAEPILADNNFSTDNLDQLLMQTSAKQSEQQVQLKLYPGGSSSEHSLTRDFLGMGGGGAAGPPRPFLPQELAKFASIGSPMGLTQFTANH 482
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju03g2634 482 FunFam protein indeterminate-domain 12-like 41 109 - -
Alju03g2634 482 SUPERFAMILY beta-beta-alpha zinc fingers 61 159 IPR036236 -
Alju03g2634 482 MobiDBLite consensus disorder prediction 333 392 - -
Alju03g2634 482 Gene3D Classic Zinc Finger 40 111 - -
Alju03g2634 482 MobiDBLite consensus disorder prediction 1 46 - -
Alju03g2634 482 FunFam protein indeterminate-domain 5, chloroplastic-like 116 195 - -
Alju03g2634 482 ProSitePatterns Zinc finger C2H2 type domain signature. 64 84 IPR013087 -
Alju03g2634 482 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 22 456 IPR031140 -
Alju03g2634 482 MobiDBLite consensus disorder prediction 19 35 - -
Alju03g2634 482 Pfam Zinc-finger double-stranded RNA-binding 62 84 IPR022755 -
Alju03g2634 482 SMART c2h2final6 138 158 IPR013087 -
Alju03g2634 482 SMART c2h2final6 103 133 IPR013087 -
Alju03g2634 482 SMART c2h2final6 62 84 IPR013087 -
Alju03g2634 482 MobiDBLite consensus disorder prediction 1 18 - -
Alju03g2634 482 Gene3D Classic Zinc Finger 112 195 - -
Alju03g2634 482 ProSiteProfiles Zinc finger C2H2 type domain profile. 62 84 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju03g2634 Alju-ChrAlju03 52557080 52558839 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju03g2634 1 470 IDZ Gene Family AT5G03150 45.872 5.45e-131 387
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Alju03g2634 zf-C2H2_jaz 7e-05 CL0361