Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju03g2627 ATGGGTAACATAGGAAGTAGTGGCGGTAACGACAACCGCCGCAGGCACAGCGCGAGTGGCAGGAGGAGTCATCCGCCTCCCCCTCCGCCGGTGACCCCACAGCCGGAAATCACCCCCAATCGATTTGTCCATCCCGGTTGTCCGCCTTACCCACCACAATTCTCAAATTCGAATCCTCCGCCGTATTACCAGTACCCGGGTTTCTATCCCCCACCACCGACGACTATGCCGCTTCCTCTGCCACCTCCTTTTGATCAGCATCATCGATTGGGTTCTCATCCACATGTCGACCCAGCATGGATGGGCGGACGTTACCCTTGTGGCCCTGTGATGCTTCCTCCTCCGCCCTATGTGGAGCATCAGAAGGCGGTTACGATAAGGAACGATGTTAATATCAAGAAGGAGACTCTGAGGATTGAGCCCGATGAAGAAAATCCGGGGAGGTTCCTTGTGGCATTCACATTTGACGCCGCTGTGGCCGGGAGCATCACCATACTTTTCTTTGCAAAAGAAGGTGATGGATGCATTCTTATGCCGACAAAGGAAAACCTTCTAGCACCTGTAACTGTGCACTTCGAGCAAGGTCTTGGCCAGAAGTTTAGACAGCCAGCTGGAACTGGTATTGACTTTTCAATATTTGAAGAATCGGAATTATTAAGAAGTGACAAGGATGTCTACCCTCTAGCAGTGAAGGCAGATGCATCCTCTGGTAATCATGAAGGATCAAATGAAACTCTTACGCCTGGTGGCACAAACTCTCAGATTACTCAAGCAGTCTTTGAGAAAGAGAAAGGAGAGTTCCGGGTGAGGGTAGTTAAGCAGATCTTGTGGGTGAATGGAATGAGATATGAGTTGCAGGAGATATATGGTATTGGTAACTCAGTGGAGAATGACTTGGATGGAAATGACCCAGGAAAAGAGTGTGTCATCTGCTTATCGGAGCCTCGGGACACAACTGTTCTTCCCTGTCGCCACATGTGCATGTGTAGCGGATGTGCGAAGGTTCTGAGGTTCCAGACAAACAGGTGCCCAATTTGCAGACAGCGAGTTGAGAGGCTTTTGGAGATAAAAGTCAACAACGGGCCAGAAGATACAGCAACACAAGTGTGTCAAGATTCCTGTACAGTATGGAACCAACTGTTATAA 1146 0.4956 MGNIGSSGGNDNRRRHSASGRRSHPPPPPPVTPQPEITPNRFVHPGCPPYPPQFSNSNPPPYYQYPGFYPPPPTTMPLPLPPPFDQHHRLGSHPHVDPAWMGGRYPCGPVMLPPPPYVEHQKAVTIRNDVNIKKETLRIEPDEENPGRFLVAFTFDAAVAGSITILFFAKEGDGCILMPTKENLLAPVTVHFEQGLGQKFRQPAGTGIDFSIFEESELLRSDKDVYPLAVKADASSGNHEGSNETLTPGGTNSQITQAVFEKEKGEFRVRVVKQILWVNGMRYELQEIYGIGNSVENDLDGNDPGKECVICLSEPRDTTVLPCRHMCMCSGCAKVLRFQTNRCPICRQRVERLLEIKVNNGPEDTATQVCQDSCTVWNQLL 381
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju03g2627 381 FunFam probable E3 ubiquitin-protein ligase LOG2 292 357 - -
Alju03g2627 381 PANTHER MAHOGUNIN 1 360 IPR045194 GO:0061630
Alju03g2627 381 MobiDBLite consensus disorder prediction 22 55 - -
Alju03g2627 381 Pfam Zinc finger, C3HC4 type (RING finger) 306 352 - -
Alju03g2627 381 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 292 357 IPR013083 -
Alju03g2627 381 ProSiteProfiles Zinc finger RING-type profile. 308 347 IPR001841 -
Alju03g2627 381 SMART ring_2 308 346 IPR001841 -
Alju03g2627 381 MobiDBLite consensus disorder prediction 1 55 - -
Alju03g2627 381 SUPERFAMILY RING/U-box 307 353 - -
Alju03g2627 381 CDD mRING-HC-C3HC5_MGRN1-like 306 347 IPR045195 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju03g2627 Alju-ChrAlju03 52518804 52521312 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju03g2627 103 327 C3H Transcription Factor Family AT3G09770 65.517 2.39e-103 307