Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju03g2622 ATGTTTGCGCATGTTTTATTCGGCTCACCCAATACCGCTATCGACTTCGCCGCCGCCGCTACCGAAATGCCGCCAAAGCTCGATCCTTCCCAGGTCGTGGACGTATTTGTCCGAGTGACGGGCGGTGAGGTTGGTGCGGCGAGTTCGCTGGCCCCGAAGATCGGTCCCCTGGGTCTTTCCCCAAAGAAGATCGGTGAAGACATCGCCAAGGAGACCGCAAAAGATTGGAAGGGTCTGCGGGTCACCGTGAAGCTAACTGTTCAGAACCGGCAGGCCAAGGTGTCGGTGGTGCCGTCCGCCGCCGCGTTGGTGATCAAGGCCCTGAGGGAGCCCGAGAGGGACCGCAAGAAAACAAAGAACATCAAGCACAACGGTAACATCTCACTCGACGACGTCATTGAGATTGCCAGAACTATGCGGCCCAGGTCCATGGCCAAGGATTTGAGCGGAACCGTGAAGGAGATTATCGGAACTTGTGTTTCTGTTGGATGCACTGTGGACGGCAAGGACCCCAAGGATCTGCAGCAGGAGATAACCGACGGAGACGTTGAAATCCCCCTCGAATGA 567 0.5679 MFAHVLFGSPNTAIDFAAAATEMPPKLDPSQVVDVFVRVTGGEVGAASSLAPKIGPLGLSPKKIGEDIAKETAKDWKGLRVTVKLTVQNRQAKVSVVPSAAALVIKALREPERDRKKTKNIKHNGNISLDDVIEIARTMRPRSMAKDLSGTVKEIIGTCVSVGCTVDGKDPKDLQQEITDGDVEIPLE 188
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju03g2622 188 FunFam 60S ribosomal protein L12 104 186 - -
Alju03g2622 188 Pfam Ribosomal protein L11, RNA binding domain 97 166 IPR020783 GO:0003735|GO:0005840|GO:0006412
Alju03g2622 188 Hamap 50S ribosomal protein L11 [rplK]. 31 168 IPR000911 GO:0003735|GO:0005840|GO:0006412
Alju03g2622 188 SMART rl11c 35 167 IPR000911 GO:0003735|GO:0005840|GO:0006412
Alju03g2622 188 FunFam 60S ribosomal protein L12 23 103 - -
Alju03g2622 188 SUPERFAMILY Ribosomal protein L11, C-terminal domain 98 171 IPR036769 -
Alju03g2622 188 Pfam Ribosomal protein L11, N-terminal domain 37 91 IPR020784 -
Alju03g2622 188 CDD Ribosomal_L11 35 166 IPR000911 GO:0003735|GO:0005840|GO:0006412
Alju03g2622 188 ProSitePatterns Ribosomal protein L11 signature. 153 168 IPR020785 GO:0003735|GO:0005840|GO:0006412
Alju03g2622 188 Gene3D - 104 186 IPR036769 -
Alju03g2622 188 PANTHER 60S RIBOSOMAL PROTEIN L12 23 173 IPR000911 GO:0003735|GO:0005840|GO:0006412
Alju03g2622 188 Gene3D - 17 103 IPR036796 -
Alju03g2622 188 SUPERFAMILY Ribosomal L11/L12e N-terminal domain 20 108 IPR036796 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju03g2622 Alju-ChrAlju03 52484246 52485367 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju03g2622 23 186 Cytoplasmic Ribosomal Protein Gene Family AT2G37190 89.634 1.44e-107 303