Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju03g2620 ATGGAAATGGAGGGTGAGACGAGACCGTCAAGATTTAAGAGGATCTGCGTCTTCTGTGGGAGCAGCCAGGGCAAGAAGAGTAGCTATCAAGATGCCGCCATTGAGCTTGGCAAGGAACTGGTCTCAAGGAACATCGATTTGGTGTATGGAGGGGGAAGCATTGGTCTCATGGGTTTAGTTTCACAAGCAGTTCATGATGGCGGTCGGCATGTCATTGGAGTTATTCCCAAGACGCTCATGCCTCGAGAGCTCACTGGGGAAACAGTGGGAGAAGTGAAAGCAGTGGCAGATATGCATCAAAGGAAGGCAGAGATGGCTAGGCACTCAGATGCTTTTATCGCCTTACCAGGAGGTTATGGGACTCTTGAGGAGCTTCTTGAAGTCATAACATGGGCTCAGCTTGGGATACATGACAAACCGGTGGGGTTACTAAATGTTGACGGATACTACAACTCTTTGCTATCATTTGTTGACAAAGCTGTGGAAGAGGGATTTATTCATCCAAAGGCCCGCCACATAATTGTTTCTGCACCAACACCAAAAGAACTGGTGAAGCAATTGGAGGAATATGTTCCCTGTCACGAAAGTGTTGCTTCCAAGCTGAGCTGGCAGATGGAACAGATGAGTTATGCTCAGGAATATGGCATGTCAAGTGTTAAGGACGAAGACATATTTGAAATTTCTTTGATTCTTTGTGAGCAACTGGCACCGATCTCAAATCCATCTCTGCTTTCCCAGATGCTTACGTTTCTGGAGGTGAAGGAGGAATTGAAGGAAGAGGGAAAATGCTTGGACAGTCAACTGTGGCATGCTTGCGCCGGCGGCATGGTACAAATGCCGTCGTTGAACTCTAAGGTGTTTTACTTCCCTCAGGGTCACGCCGAGCATGCAAGTGGGCCCGTCGATTTCAAGAAATGCCGGAGGTTTCCTCTTCCACCCTACATTTTATGCAGAGTCGACTCTGTTAAATACATGGCTGATCCCGATACAGATGAGGTATATGCCAAACTTAGGCTTGTTCCTCTGAATCGGGAGGAGGCCGATTGTGATGAGGACGGCGGCGGCGCCGATGGATCTGAATCTCAAGAGAGACTTGCCCACTTCGCAAAAATTTTGACGCAGTCAGACGCCAACAATGGCGGTGGCTTTTCTGTTCCTAGATTCTGCGCAGAGACCATTTTTCCTCCTCTGAACTTCAAAGCGGTGATACCTCTCCAGTATATTGAGGCTAAAGACGTTCATGGCGAATCGTGGAAGTTCAAGCACATTTACAGAGGCACACCGAGGCGGCATCTTTTGACCACTGGATGGAGTCCATTTGTGAACAAGAAAAGGCTCGTTGCAGGGGATTCGATAGTATTTTTATGCAACAATAATAAAGATATCTACGTAGCGGTTCGAAGGGCTAAAAGAAGAAATGGTCGTCCATTTGAGTCATCATCACTACCTTGCCGACGATTTTCTGCCTCGTTGATTGGAAGTGATAGCAAAAAACCAGCAATCAATAATGGTACAGGCAATGGGAAAGTAAAAGCCGAAGCAGTTATTGAAGCTGTTAATCTTGCTGCTGAGGGACAGCCCTTTGAGGTTGTGTACTATCCTAGAGCAGGCACCCCTGAGTTCTGTGTAAGAGCCTCTTCAGTTAAAACGGCCCTGCAAATTCGGTGGTGTTCTGGAATGAGGTTCAAGATGGCTTTTGAAGCAGAGGATTCACGAATAAGTTGGTTTATGGGAACTATATCTTCGGCGCATGTTGCTGATTCTCTAGTCTGGCCCGATTCACCTTGGAGGCTTCTCCAGGTTACATGGGATGAACCAGGATTAGTTCAGGATGTGAAACGGGTGAGCCCATGGTTGGTTCAATTGGTGTCGAACATGCCTGCAATTCCTCCACCTTTTTCACCACCAAGGAAGAAAATGAGGCTGCCTCAGCATCCAGATGTTCCACTTGATACTCATCAGATTTATGCGCCCACGTTTTTTGGCAACCTCCTAGGTTCCACGAACAACCCCTTTCGGTATTATGTACCTGAAACCACTCCTGCTGGCATGCAGGGAGCCAGGCATGCTTATTATGGTCTACCCTTGGCAGATCTCGACCTCAATAATTTGCAGTTGCCTCTGTGTTTGACTAGTTTACCACCTGTTGCTCTAGCTTCTACGCAAAACATGGTAAGTTATATCCCGGCAATGCAAAATCATGGCATGAGTGAGAATGTTTCTCAGTTGATTTCCAATGAAAATTCTGCCCAGTCTTTGGAGGAACAGGATCATGATAACAAGACACCCCACCTTGTGCTTTTTGGGAACAAAATTATTCCATAG 2325 0.4684 MEMEGETRPSRFKRICVFCGSSQGKKSSYQDAAIELGKELVSRNIDLVYGGGSIGLMGLVSQAVHDGGRHVIGVIPKTLMPRELTGETVGEVKAVADMHQRKAEMARHSDAFIALPGGYGTLEELLEVITWAQLGIHDKPVGLLNVDGYYNSLLSFVDKAVEEGFIHPKARHIIVSAPTPKELVKQLEEYVPCHESVASKLSWQMEQMSYAQEYGMSSVKDEDIFEISLILCEQLAPISNPSLLSQMLTFLEVKEELKEEGKCLDSQLWHACAGGMVQMPSLNSKVFYFPQGHAEHASGPVDFKKCRRFPLPPYILCRVDSVKYMADPDTDEVYAKLRLVPLNREEADCDEDGGGADGSESQERLAHFAKILTQSDANNGGGFSVPRFCAETIFPPLNFKAVIPLQYIEAKDVHGESWKFKHIYRGTPRRHLLTTGWSPFVNKKRLVAGDSIVFLCNNNKDIYVAVRRAKRRNGRPFESSSLPCRRFSASLIGSDSKKPAINNGTGNGKVKAEAVIEAVNLAAEGQPFEVVYYPRAGTPEFCVRASSVKTALQIRWCSGMRFKMAFEAEDSRISWFMGTISSAHVADSLVWPDSPWRLLQVTWDEPGLVQDVKRVSPWLVQLVSNMPAIPPPFSPPRKKMRLPQHPDVPLDTHQIYAPTFFGNLLGSTNNPFRYYVPETTPAGMQGARHAYYGLPLADLDLNNLQLPLCLTSLPPVALASTQNMVSYIPAMQNHGMSENVSQLISNENSAQSLEEQDHDNKTPHLVLFGNKIIP 774
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju03g2620 774 Gene3D - 366 470 IPR015300 -
Alju03g2620 774 NCBIfam Rossman fold protein, TIGR00730 family 13 190 IPR005269 GO:0009691|GO:0016787
Alju03g2620 774 SUPERFAMILY MCP/YpsA-like 11 190 - -
Alju03g2620 774 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 262 755 IPR044835 GO:0003677|GO:0006355|GO:0009725
Alju03g2620 774 Pfam Auxin response factor 518 600 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Alju03g2620 774 SUPERFAMILY DNA-binding pseudobarrel domain 361 474 IPR015300 -
Alju03g2620 774 ProSiteProfiles B3 DNA-binding domain profile. 368 470 IPR003340 GO:0003677
Alju03g2620 774 FunFam Auxin response factor 556 628 - -
Alju03g2620 774 FunFam CASP-like protein 3 189 - -
Alju03g2620 774 Gene3D - 555 627 - -
Alju03g2620 774 SMART B3_2 368 470 IPR003340 GO:0003677
Alju03g2620 774 Gene3D - 3 189 - -
Alju03g2620 774 Pfam B3 DNA binding domain 368 469 IPR003340 GO:0003677
Alju03g2620 774 CDD B3_DNA 367 454 IPR003340 GO:0003677
Alju03g2620 774 Pfam Possible lysine decarboxylase 57 187 IPR031100 -
Alju03g2620 774 FunFam Auxin response factor 366 470 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju03g2620 Alju-ChrAlju03 52462103 52472430 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju03g2620 262 774 B3 DNA Binding Superfamily AT4G30080 53.160 6.18e-170 503
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Alju03g2620 Lysine_decarbox 1.2e-45 CL0349