Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Alju03g2609 | ATGGTTAGTCTTTTCTTTTTAAATACACCGGAAAGCGAAAATAAATGATCTCCTACACCGTCCTTTACTTTCCGTCTTGCTTGTTGCACTGCGGAAACAAGACCTTCTCCTATTAGTCTACGCGTATCGCTCCCTTCTTTCACCATGTCTAACCAGGCTGAATCATCTGATACTAAGGGAGCGAAGAAGGACTTCAGCACGGCGATTCTGGAACGCAAGAAGGCGCCAAATCGGTTGGTTGTTGATGAGGCTATAAACGATGACAATTCTGTGGTCGCACTCCACCCGGCGACCTTGGAAAAACTGCAGCTGTTTCGCGGCGACACGATTTTGATCAAGGGAAAGAAAAGAAGAGATACAATCTGCATTGTCCTCGCTGATGACACGTGTGAAGAACCAAGGATAAGAATGAACAAGGTTGTGAGAAGCAACCTGAGGGTTAGGCTCGGTGATGTTGTTTCTGTGCATCCCTGTGCTGATGTTAAATATGGCAAGCGAGTCCACATTCTTCCTATTGATGACACTATCGAAGGGGTGACTGGAAGTCTCTTTGATGCATACTTAAAACCTTATTTTCTGGAGGCTTATCGCCCAATGAGGAAGGGTGACTTATTCCTTGTCAGAGGGGGAATGAGAAGTGTAGAATTCAAGGTTATTGAAACTGACCCTTCAGAGTATTGCGTTGTTGCGCCAGACACTGAGATCTTTTGTGAAGGGGATCCTGTGAAGAGGGAAGATGAGGATCGATTAGATGATGTTGGTTATGATGATGTTGGTGGTGTAAGAAAGCAGATGGCCCAGATTAGGGAATTGGTGGAATTGCCACTGAGGCATCCACAATTATTCAAGTCTATTGGTGTTAAGCCACCAAAAGGTATTTTGCTGTATGGGCCTCCTGGGTCTGGTAAGACTTTAATTGCCCGGGCAGTTGCAAATGAAACTGGTGCCTTCTTTTTCTGCATCAATGGACCTGAGATCATGTCAAAATTGGCCGGTGAGAGTGAAAGCAATCTAAGGAAGGCATTTGAGGAAGCTGAAAAGAATGCACCGTCTATCATCTTCATTGATGAGATAGATTCTATAGCTCCAAAGCGGGAGAAGACTCATGGAGAAGTTGAGAGGAGGATTGTATCCCAGCTTTTGACACTCATGGATGGGCTAAAAGCACGTGCACATGTAATTGTTATTGGAGCCACAAATCGTCCCAACAGCATTGACCCAGCTCTTAGGAGGTTTGGAAGGTTTGACCGGGAGATAGATATTGGTGTTCCTGATGAAGTTGGCCGTCTTGAGGTGCTACGTATCCACACAAAGAATATGAAGCTTGCTGAAGATGTTGATCTGGAAAAAATTTCAAAGAATACCCATGGCTATGTTGGTGCTGATCTTGCTGCTCTGTGCACTGAAGCTGCCCTTCAATGCATCAGAGAGAAAATGGACGTGATTGACTTGGAAGATGAAACAATTGATGCTGAGATACTGAACTCAATGGCTGTGACAAATGATCATTTCCAGACTGCTCTTGGATCAAGCAACCCTTCTGCACTCCGTGAAACGGTTGTTGAAGTGCCCAATGTCAGCTGGGAAGATATTGGTGGCCTTGAGAATGTTAAGAGAGAGCTGCAAGAGACTGTTCAATATCCCGTGGAACACCCTGAAAAATTCGAGAAGTTTGGAATGTCCCCATCTAAGGGGGTTCTTTTCTATGGGCCTCCTGGATGTGGCAAGACGCTTTTGGCTAAAGCTATTGCTAATGAATGCCAGGCTAACTTCATCAGTGTTAAGGGACCTGAGCTACTTACAATGTGGTTTGGAGAAAGTGAGGCTAATGTGCGGGAAATATTTGACAAGGCCCGTGGTTCTGCTCCATGTGTCTTGTTCTTTGATGAACTCGACTCAATTGCAACTCAGAGAGGCAGCAGTGTCGGAGATGCTGGGGGTGCTGCTGACAGAGTTTTGAATCAACTCCTTACAGAAATGGATGGCATGTCAGCTAAGAAAACTGTGTTCATCATCGGGGCGACCAATCGACCGGACATCATAGACCCTGCACTTCTGCGACCTGGTCGTCTAGACCAGTTGATTTATATCCCCCTCCCAGATGAGGAATCCCGCTATCAGATATTTAAATCTTGCCTAAGAAAATCCCCCGTGGCAAAGGATGTTGATCTTGGAGCTCTTGCCAAGTATACTCAGGGCTTCAGTGGTGCTGATATTACTGAGATTTGCCAGCGTGCATGCAAGTATGCCATAAGAGAGAACATTGAAAAGGACATTGAAAGAGAACGGAGGAGAAGTGAGGATCCTGAGGCGATGGAGGAGGATGAGGAAGATGAGGTGGCAGAAATTAAGGCTGCTCATTTCGAGGAATCCATGAAGTATGCTCGAAGGAGTGTAAGTGATGCTGACATTCGCAAGTACCAGGCATTTGCCCAGACATTACAGCAATCCAGAGGATTCGGAACAGAGTTCAGGTTCCCAGATAGCACCTCTGCCGGCGCCGCCACTGCCTCAGCCGACCCTTTTGCACCTGCTGGTGGCGCTGATGAGGATGACCTTTACAATTAG | 2568 | 0.4622 | MVSLFFLNTPESENKXSPTPSFTFRLACCTAETRPSPISLRVSLPSFTMSNQAESSDTKGAKKDFSTAILERKKAPNRLVVDEAINDDNSVVALHPATLEKLQLFRGDTILIKGKKRRDTICIVLADDTCEEPRIRMNKVVRSNLRVRLGDVVSVHPCADVKYGKRVHILPIDDTIEGVTGSLFDAYLKPYFLEAYRPMRKGDLFLVRGGMRSVEFKVIETDPSEYCVVAPDTEIFCEGDPVKREDEDRLDDVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGAFFFCINGPEIMSKLAGESESNLRKAFEEAEKNAPSIIFIDEIDSIAPKREKTHGEVERRIVSQLLTLMDGLKARAHVIVIGATNRPNSIDPALRRFGRFDREIDIGVPDEVGRLEVLRIHTKNMKLAEDVDLEKISKNTHGYVGADLAALCTEAALQCIREKMDVIDLEDETIDAEILNSMAVTNDHFQTALGSSNPSALRETVVEVPNVSWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMWFGESEANVREIFDKARGSAPCVLFFDELDSIATQRGSSVGDAGGAADRVLNQLLTEMDGMSAKKTVFIIGATNRPDIIDPALLRPGRLDQLIYIPLPDEESRYQIFKSCLRKSPVAKDVDLGALAKYTQGFSGADITEICQRACKYAIRENIEKDIERERRRSEDPEAMEEDEEDEVAEIKAAHFEESMKYARRSVSDADIRKYQAFAQTLQQSRGFGTEFRFPDSTSAGAATASADPFAPAGGADEDDLYN | 855 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Alju03g2609 | 855 | Gene3D | - | 55 | 160 | - | - | |
| Alju03g2609 | 855 | Pfam | AAA+ lid domain | 445 | 487 | IPR041569 | - | |
| Alju03g2609 | 855 | Pfam | AAA+ lid domain | 721 | 761 | IPR041569 | - | |
| Alju03g2609 | 855 | FunFam | Transitional endoplasmic reticulum ATPase | 516 | 699 | - | - | |
| Alju03g2609 | 855 | CDD | RecA-like_CDC48_r2-like | 537 | 697 | - | - | |
| Alju03g2609 | 855 | Gene3D | - | 161 | 257 | - | - | |
| Alju03g2609 | 855 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 252 | 514 | IPR027417 | - | |
| Alju03g2609 | 855 | Pfam | Cell division protein 48 (CDC48), domain 2 | 180 | 243 | IPR004201 | - | |
| Alju03g2609 | 855 | FunFam | Cell division control 48 | 161 | 257 | - | - | |
| Alju03g2609 | 855 | Gene3D | - | 516 | 699 | IPR027417 | - | |
| Alju03g2609 | 855 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 524 | 812 | IPR027417 | - | |
| Alju03g2609 | 855 | NCBIfam | CDC48 family AAA ATPase | 79 | 815 | IPR005938 | GO:0016787 | |
| Alju03g2609 | 855 | Gene3D | - | 424 | 515 | - | - | |
| Alju03g2609 | 855 | PANTHER | AAA-FAMILY ATPASE | 450 | 817 | - | - | |
| Alju03g2609 | 855 | ProSitePatterns | AAA-protein family signature. | 393 | 411 | IPR003960 | GO:0005524|GO:0016887 | |
| Alju03g2609 | 855 | FunFam | Transitional endoplasmic reticulum ATPase | 55 | 160 | - | - | |
| Alju03g2609 | 855 | FunFam | Cell division control 48 | 424 | 515 | - | - | |
| Alju03g2609 | 855 | Gene3D | - | 703 | 811 | - | - | |
| Alju03g2609 | 855 | MobiDBLite | consensus disorder prediction | 821 | 836 | - | - | |
| Alju03g2609 | 855 | SUPERFAMILY | Cdc48 domain 2-like | 160 | 252 | IPR029067 | - | |
| Alju03g2609 | 855 | Gene3D | - | 258 | 422 | IPR027417 | - | |
| Alju03g2609 | 855 | Pfam | ATPase family associated with various cellular activities (AAA) | 566 | 699 | IPR003959 | GO:0005524|GO:0016887 | |
| Alju03g2609 | 855 | Pfam | ATPase family associated with various cellular activities (AAA) | 293 | 422 | IPR003959 | GO:0005524|GO:0016887 | |
| Alju03g2609 | 855 | SMART | CDC48_N_2 | 78 | 161 | IPR003338 | - | |
| Alju03g2609 | 855 | SMART | AAA_5 | 289 | 425 | IPR003593 | GO:0016887 | |
| Alju03g2609 | 855 | SMART | AAA_5 | 562 | 701 | IPR003593 | GO:0016887 | |
| Alju03g2609 | 855 | SMART | CDC48_2_2 | 178 | 244 | IPR004201 | - | |
| Alju03g2609 | 855 | MobiDBLite | consensus disorder prediction | 821 | 855 | - | - | |
| Alju03g2609 | 855 | Pfam | Cell division protein 48 (CDC48), N-terminal domain | 78 | 159 | IPR003338 | - | |
| Alju03g2609 | 855 | SUPERFAMILY | ADC-like | 75 | 158 | IPR009010 | - | |
| Alju03g2609 | 855 | ProSitePatterns | AAA-protein family signature. | 669 | 687 | IPR003960 | GO:0005524|GO:0016887 | |
| Alju03g2609 | 855 | CDD | RecA-like_CDC48_r1-like | 257 | 422 | - | - | |
| Alju03g2609 | 855 | FunFam | Transitional endoplasmic reticulum ATPase | 254 | 422 | - | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Alju03g2609 | Alju-ChrAlju03 | 52362973 | 52369281 | Dispersed/Wgd |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Alju03g2609 | 248 | 825 | Calmodulin-binding Proteins | AT3G56690 | 37.231 | 6.51e-128 | 407 |