Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju03g2596 ATGTCACAAGATTCTGTCGAGATAAAGACGATTGAGCAGTGGAGATGGTCGGAAATGCAAGGCCTTGAGCTCGTCTCTCCTGCTCCTATCTCTGAACCTCACACAGAGCCAACAACACAAACAGAGGAAAACAGAGAGGCGAAGCCAATGGAAGAAGCTGCTCAAGAGGGAGAGCGAAAGGAAGTTGGAAATCTCGCTAATAGAAGTGCCGGCGGTGGAAGTAGCAGCAGTAGTGGAGAGAAGCCTGAGAATATTCCGGCGGTTGGATTTGGCGAGCTTTTCAGATTTGCCGATGGGTTGGATTACATTCTGATGGCTATAGGAACGGTCGGAGCAATCGTGCACGGTTGTTCTCTGCCTTTATTTCTCCGGTTCTTCGCCGATCTCGTTAATTCTTTCGGGTCGAATGCCAATAATGTGGACAAGATGACTCAGGAAGTCGTCAAGTACGCATTTTACTTCCTGGTGGTCGGTGCTGCTATATGGGCATCATCATGGGCAGAGATATCTTGCTGGATGTGGACTGGCGAGAGGCAATCAACGAAGATGAGGATCAAGTACCTTGAAGCTGCCTTAAACCAGGACATCCCATACTTTGATACCGAGGTTAGAACATCCGACGTCGTTTTTGCCATCAACACTGATGCAGTCATGGTCCAAGACGCCATTAGCGAGAAGCTGGGTAATTTCATTCACTACATGGCAACTTTTGTTTCTGGATTTGTGGTGGGTTTCACCGCCGTTTGGCAATTAGCTCTGGTTACCCTGGCTGTTGTCCCTATGATAGCTGTAATCGGAGGCATTCACACCGCCACCTTGACAAAGCTCTCAGCCAAAGGCCAAGAAGCTCTCTCTAAAGCTGGAAACATCGTCGAACAGACGATCGTGCAGATTCGTGTGGTACTGGCTTTCGTTGGCGAGAGTCGAGCATTACAGGACTACTCTTCGGCGTTGAAGGCGGCCCAAAAGACTGGCTACAAAAGTGGTTTCGCAAAGGGTATGGGATTAGGAGCGACATACTTTGTCGTTTTCTGCTGTTATGCGCTGCTGTTATGGTACGGCGGCTACCTCGTCAGGCACCACTACACCAATGGCGGACTCGCCATTTCCACCATGTTCGCTGTTATGATTGGCGGTTTGGGTTTGGGGCAATCTGTGCCGAGCATCGCTGCATTCACAAAGGCCAGAGTCGCCGCCGCAAAAATTTTCCGAATCATCAATCACAAACCGAGTGTAGACCGGAATACTGATTCGGGTTTGGAATTAGAGTCCGTGACCGGGTTAGTTGAGCTCAAAAATGTAGATTTCTCATACCCGTCAAGGCTAGATGTTCGGATCCTCAATAATTTCTCTTTGAATGTACCGGCTGGCAAGACCATTGCTTTGGTCGGCAGCAGCGGCTCCGGCAAGAGCACCGTCGTCTCCCTCATCGAGAGATTCTATGACCCCACTTCAGGACAAGTTCTTCTGGATGGACATGACATTAAAACATTGAAGCTGAAATGGCTGAGGCAGCAAATAGGACTTGTAAGCCAAGAGCCTGCTTTATTTGCAACCACTATCCGAGAAAATATATTGTTGGGTAGGTCTGATGCAGATCAAGTGGAGATCGAAGAAGCTGCAAGAGTAGCTAATGCTCATTCCTTTATTATCAAGCTCCCCGACGGCTATGAGACCCAGGTAGGAGAGAGAGGATTGCAACTTTCTGGAGGGCAAAAGCAGAGAATAGCAATAGCAAGGGCAATGTTGAAGAACCCAGCAATTCTTCTTTTGGACGAGGCGACAAGTGCATTAGACTCTGAATCTGAAAAGCTAGTGCAAGAAGCCCTTGACAGATTCATGATTGGTAGAACAACTCTTGTAATTGCCCATCGCCTCTCCACCATTCGCAAAGCTGACCTTGTTACTGTGCTTCAGCAAGGAAGTGTTTCTGAAATTGGAACTCATGATGAACTCTACGCTAAGGGTGAAAATGGAGTTTATGCCAAGCTTATACGGATGCAAGAAACGGCACATGAAACCGCTATGAATAATGCCAGAAAGAGCAGTGCAAGGCCTTCAAGTGCAAGAAATTCTGTTAGCTCCCCAATAATTGCTCGGAATTCTTCTTATGGCCGCTCACCATATTCACGCAGGCTATCTGACTTCTCTACTTCTGACTTTAGTCTATCTCTTGATGCTTCACATCCAAACTACAGGCTTGAAAAGCTTGCCTTCAAAGAGCAAGCCAGTTCATTTTGGCGCCTTGCAAAAATGAATTCTCCTGAATGGCTTTATGCTTTCGTTGGTTCCATAGGCTCCGTTATTTGCGGATCCCTCAGTGCATTCTTTGCTTATGTTCTCAGTGCTGTCCTCAGTGTTTATTACAATCCTGATCACAGATACATGATCCGAGAAATAGAAAAGTACTGTTACTTGTTGATTGGGCTTTCATCAGCTGCACTTATCTTCAATACATTGCAACACTTCTTTTGGGATATTGTTGGTGAAAACCTTACTAAACGAGTCCGGGAGAAAATGCTCACTGCTGTGCTGAAAAATGAAATGGCTTGGTTTGATCAGGAGGAAAATGAGAGTGCCCGTGTTGCAGCAAGGCTCGCCCTTGATGCCAACAATGTTAGATCAGCCATCGGAGATCGGATTTCAGTAATTGTGCAGAATACTGCACTTATGTTAGTTGCTTGCACTGCAGGGTTTGTTTTGCAATGGCGCCTTGCACTTGTCCTCATAGCTGTATTCCCCGTCGTTGTTGCAGCCACTGTCTTGCAGAAAATGTTCATGACTGGTTTCTCTGGAGACTTGGAAGCTGCACATGCCAAGGCCACACAACTTGCAGGGGAGGCTATAGCAAATGTAAGAACTGTTGCGGCCTTCAATTCAGAAACAAAAATCGTTGGTCTTTTCACTACCAACCTTGAAACTCCGCTACGACGTTGCTTTTGGAAGGGGCAAATTTCTGGAAGTGGGTTTGGAGTAGCTCAATTTGCTCTCTATGCTTCTTATTCACTTGGTCTTTGGTATGCTTCTTGGCTTGTGAAGCATGGAATTTCTGATTTCTCTAAAACAATCAGAGTCTTTATGGTCCTTATGGTCTCTGCCAATGGTGCTGCTGAAACTTTAACCCTGGCTCCTGACTTCATAAAGGGAGGTCGAGCCATGAGGTCAGTCTTTGAACTTCTTGATCGTAGAACTGAAATTGAACCAGATGAACCAGATACTATCCCTGTTCCTGATCAGCTTCGTGGGGAAATTGAACTCAAGCACGTAGACTTCTCTTACCCCACTCGCCCAGATATGCCAGTTTTTCGTGATCTCAATCTTCGTGCTAAGGCGGGTAAAACTCTTGCCCTCGTAGGACCTAGTGGCTGCGGTAAGAGCTCAGTGATTGCCCTTGTACAGAGATTCTATGATCCAACTTCTGGGCGGGTTTTGATTGATGGCAAGGACATTAGAAAATACAACCTCAAGTCCCTCAGACGCCACATTGCCCTTGTACCGCAAGAGCCTTGCTTGTTTGCTTCTTCTATACATGAAAACATAGCGTATGGGAATGAGTCAGCAACTGAAGCTGAGCTAATTGAAGCAGCTACTCTTGCCAATGCTCACAAGTTCATATCTTCCTTGCCAGATGGATACAAAACCTTTGTTGGGGAAAGAGGAGTCCAGCTATCTGGAGGACAGAAACAAAGAATAGCAATAGCCCGGGCCTTTGTGAGGAAGGCGGAGATTATGCTTCTCGACGAGGCAACAAGCGCACTTGATGCTGAATCTGAGAGGTCTGTTCAAGAGGCTCTAGACCGTGCGTGCTCTGGAAAAACTACTATTATTGTTGCCCACAGGCTGTCAACTATTAGAAATGCCAATGTGATTGCTGTAATTGATGATGGGAAAGTGGCAGAGCAAGGATCTCACTCGCAATTGTTGAAAAATCACCCTGATGGGATATATGCACGCATGATCCAATTACAAAGGTTCTCACACAACCAAGTTATTGGGATGGCCTCTGGTTCAAGTTCTGCAAGACCAAAAGATGATGATGAAAGAGAAGGTTAG 4053 0.4641 MSQDSVEIKTIEQWRWSEMQGLELVSPAPISEPHTEPTTQTEENREAKPMEEAAQEGERKEVGNLANRSAGGGSSSSSGEKPENIPAVGFGELFRFADGLDYILMAIGTVGAIVHGCSLPLFLRFFADLVNSFGSNANNVDKMTQEVVKYAFYFLVVGAAIWASSWAEISCWMWTGERQSTKMRIKYLEAALNQDIPYFDTEVRTSDVVFAINTDAVMVQDAISEKLGNFIHYMATFVSGFVVGFTAVWQLALVTLAVVPMIAVIGGIHTATLTKLSAKGQEALSKAGNIVEQTIVQIRVVLAFVGESRALQDYSSALKAAQKTGYKSGFAKGMGLGATYFVVFCCYALLLWYGGYLVRHHYTNGGLAISTMFAVMIGGLGLGQSVPSIAAFTKARVAAAKIFRIINHKPSVDRNTDSGLELESVTGLVELKNVDFSYPSRLDVRILNNFSLNVPAGKTIALVGSSGSGKSTVVSLIERFYDPTSGQVLLDGHDIKTLKLKWLRQQIGLVSQEPALFATTIRENILLGRSDADQVEIEEAARVANAHSFIIKLPDGYETQVGERGLQLSGGQKQRIAIARAMLKNPAILLLDEATSALDSESEKLVQEALDRFMIGRTTLVIAHRLSTIRKADLVTVLQQGSVSEIGTHDELYAKGENGVYAKLIRMQETAHETAMNNARKSSARPSSARNSVSSPIIARNSSYGRSPYSRRLSDFSTSDFSLSLDASHPNYRLEKLAFKEQASSFWRLAKMNSPEWLYAFVGSIGSVICGSLSAFFAYVLSAVLSVYYNPDHRYMIREIEKYCYLLIGLSSAALIFNTLQHFFWDIVGENLTKRVREKMLTAVLKNEMAWFDQEENESARVAARLALDANNVRSAIGDRISVIVQNTALMLVACTAGFVLQWRLALVLIAVFPVVVAATVLQKMFMTGFSGDLEAAHAKATQLAGEAIANVRTVAAFNSETKIVGLFTTNLETPLRRCFWKGQISGSGFGVAQFALYASYSLGLWYASWLVKHGISDFSKTIRVFMVLMVSANGAAETLTLAPDFIKGGRAMRSVFELLDRRTEIEPDEPDTIPVPDQLRGEIELKHVDFSYPTRPDMPVFRDLNLRAKAGKTLALVGPSGCGKSSVIALVQRFYDPTSGRVLIDGKDIRKYNLKSLRRHIALVPQEPCLFASSIHENIAYGNESATEAELIEAATLANAHKFISSLPDGYKTFVGERGVQLSGGQKQRIAIARAFVRKAEIMLLDEATSALDAESERSVQEALDRACSGKTTIIVAHRLSTIRNANVIAVIDDGKVAEQGSHSQLLKNHPDGIYARMIQLQRFSHNQVIGMASGSSSARPKDDDEREG 1350
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju03g2596 1350 Pfam ABC transporter 447 596 IPR003439 GO:0005524
Alju03g2596 1350 FunFam ABC transporter B family member 1 1075 1324 - -
Alju03g2596 1350 FunFam ABC transporter B family member 19 1050 1072 - -
Alju03g2596 1350 FunFam ABC transporter B family member 1 92 427 - -
Alju03g2596 1350 SUPERFAMILY ABC transporter transmembrane region 93 413 IPR036640 GO:0005524|GO:0016020
Alju03g2596 1350 Gene3D ABC transporter type 1, transmembrane domain 1050 1326 IPR036640 GO:0005524|GO:0016020
Alju03g2596 1350 Gene3D ABC transporter type 1, transmembrane domain 740 1049 IPR036640 GO:0005524|GO:0016020
Alju03g2596 1350 CDD ABC_MTABC3_MDL1_MDL2 1084 1323 - -
Alju03g2596 1350 SMART AAA_5 456 642 IPR003593 GO:0016887
Alju03g2596 1350 SMART AAA_5 1111 1303 IPR003593 GO:0016887
Alju03g2596 1350 CDD ABC_6TM_Pgp_ABCB1_D1_like 105 402 - -
Alju03g2596 1350 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1075 1323 IPR027417 -
Alju03g2596 1350 FunFam ABC transporter B family member 1 740 1049 - -
Alju03g2596 1350 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 1084 1320 IPR003439 GO:0005524
Alju03g2596 1350 Gene3D - 1073 1324 IPR027417 -
Alju03g2596 1350 Gene3D - 419 669 IPR027417 -
Alju03g2596 1350 MobiDBLite consensus disorder prediction 672 693 - -
Alju03g2596 1350 ProSitePatterns ABC transporters family signature. 1223 1237 IPR017871 GO:0005524|GO:0016887
Alju03g2596 1350 ProSitePatterns ABC transporters family signature. 568 582 IPR017871 GO:0005524|GO:0016887
Alju03g2596 1350 MobiDBLite consensus disorder prediction 22 83 - -
Alju03g2596 1350 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 761 1048 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Alju03g2596 1350 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 420 668 IPR027417 -
Alju03g2596 1350 CDD ABC_6TM_Pgp_ABCB1_D2_like 750 1066 - -
Alju03g2596 1350 Pfam ABC transporter transmembrane region 105 378 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Alju03g2596 1350 Pfam ABC transporter transmembrane region 764 1031 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Alju03g2596 1350 SUPERFAMILY ABC transporter transmembrane region 748 1071 IPR036640 GO:0005524|GO:0016020
Alju03g2596 1350 Pfam ABC transporter 1103 1251 IPR003439 GO:0005524
Alju03g2596 1350 FunFam ABC transporter B family member 1 419 669 - -
Alju03g2596 1350 CDD ABC_MTABC3_MDL1_MDL2 429 668 - -
Alju03g2596 1350 Gene3D ABC transporter type 1, transmembrane domain 92 682 IPR036640 GO:0005524|GO:0016020
Alju03g2596 1350 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 429 665 IPR003439 GO:0005524
Alju03g2596 1350 PANTHER ABC TRANSPORTER B FAMILY 74 810 IPR039421 -
Alju03g2596 1350 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 106 394 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Alju03g2596 1350 MobiDBLite consensus disorder prediction 38 63 - -
Alju03g2596 1350 MobiDBLite consensus disorder prediction 68 82 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju03g2596 Alju-ChrAlju03 52274729 52280516 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju03g2596 81 1346 Calmodulin-binding Proteins AT2G36910 88.082 0.0 2294