Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju03g2593 ATGGGCAGAGCTCCTTGTTGTGACAAGGCAAATGTGAAGAAAGGGCCATGGTCTCCTGAAGAAGATGCTAAGCTAAAGGAGTATATGGAGAAACATGGGACAGGAGGAAACTGGATTTCTCTCCCTCAAAAAGCTGGTTTGAAAAGATGTGGGAAAAGTTGCAGACTAAGGTGGCTTAACTATCTCAGACCCAACATTAAGCACGGCCAGTTCTCTGATGATGAAGATAGAATCATTTGCAGCCTCTTTGCTAGCTTTGGAAGCAGGTGGTCGATAATAGCAGCTCATTTACCTGGGAGGACAGACAATGATATCAAGAATTATTGGAACTCCAGGCTTAAGAAGAAAGTGATGCTCATGAATCCTTCAGTTAAGGAGAATAAGCCTCATCATCATCAACATCACCAACCTAACCTTTTAAGCATTCTTCAAAACTCGACACCAGCTTCACCATTATCATTCTCAGACAGCCCCAACTCTTGCTACCACAATGCTTCTGTCTCTTTCACAGGCTCTTCCAATCTTTTGACTGGTAACGCTTCTGCTTCTAACTTCAATTTTCAACCCCAGAACATTACTTTCATGGGACACACTCAAAACCAGGCAGTTTCTATGGTTGGTGGTGAGGCTGCTAGTTGCAGCTCTTCTGATGGAAGCTGCAACAACAACCAGATCACTCATATCAAAGAAACAGAGTTTGTGTACGGAAGAGATGGAACTTTAATCCAACAGGTTGGTGGTGCGCATAATTATTATCTCAACAATGGATTGTGGGGAGAGGGTTTATTAGATTATGGGATGGATGAGATCAAACAATTAGCAAGCACAGATAATTGCAGCAACTTGTTTTTCGATGAGAAGAAAACAGAGGAAAGGGTTGTGTACTACTGA 891 0.4242 MGRAPCCDKANVKKGPWSPEEDAKLKEYMEKHGTGGNWISLPQKAGLKRCGKSCRLRWLNYLRPNIKHGQFSDDEDRIICSLFASFGSRWSIIAAHLPGRTDNDIKNYWNSRLKKKVMLMNPSVKENKPHHHQHHQPNLLSILQNSTPASPLSFSDSPNSCYHNASVSFTGSSNLLTGNASASNFNFQPQNITFMGHTQNQAVSMVGGEAASCSSSDGSCNNNQITHIKETEFVYGRDGTLIQQVGGAHNYYLNNGLWGEGLLDYGMDEIKQLASTDNCSNLFFDEKKTEERVVYY 296
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju03g2593 296 ProSiteProfiles Myb-like domain profile. 63 113 IPR001005 -
Alju03g2593 296 PANTHER OS09G0431300 PROTEIN 1 224 - -
Alju03g2593 296 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 62 IPR017930 -
Alju03g2593 296 Gene3D - 69 136 - -
Alju03g2593 296 CDD SANT 71 113 IPR001005 -
Alju03g2593 296 SMART sant 67 115 IPR001005 -
Alju03g2593 296 SMART sant 13 64 IPR001005 -
Alju03g2593 296 FunFam Transcription factor RAX3 7 68 - -
Alju03g2593 296 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 63 117 IPR017930 -
Alju03g2593 296 Gene3D - 7 68 - -
Alju03g2593 296 CDD SANT 16 62 IPR001005 -
Alju03g2593 296 Pfam Myb-like DNA-binding domain 14 62 IPR001005 -
Alju03g2593 296 Pfam Myb-like DNA-binding domain 69 111 IPR001005 -
Alju03g2593 296 ProSiteProfiles Myb-like domain profile. 9 62 IPR001005 -
Alju03g2593 296 SUPERFAMILY Homeodomain-like 11 109 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju03g2593 Alju-ChrAlju03 52251486 52252577 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju03g2593 1 132 MYB Transcription Factor Family AT2G36890 77.444 4.51e-74 229
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Alju03g2593 Myb_DNA-binding 4.4e-14 CL0123