Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju03g2574 ATGGAGGATATCATTCAAGAGCAAGTTGTTATGGTGGCGTGCAAGGATGAGGCACAAATCTTGAAGGGCAAGCGTACCAAGCGTCACAGGGCACCCTCCCCACTGAGGCTGGCCATAGCCATGCCTTGTACAACAGCCACCAGCAATGATGAATTGAGGGACAGCACGCCGTCGTCCACGGCGGAAGAGGAGGAGGACATGGCTAATTGTTTGATTCTTTTGTCTCACGGCGGCAAATCCTCCCACCCCATGGTGGGTGTCCCTAATAAGGATGGGGCATACCTTTACCAGTGCAAGACTTGTGACCGAGGCTTCCCTTCTTTCCGAGCGCTTGGCGGACACAGAGCCAGACACAAGAAGATGAAGACTAACCCAGAACATGGTTACGACGATTATTATACCAGCACTGCTCTCTCCTTGCAATTATCAAGTAGCAGGCTTTCTTTGTGTAGCGCTAATAAATCATCGTCTAAAGTTCATGGGTGTTCTATTTGCGGGGCTGAGTTCTCTTCTGGCCAAGCCTTGGGGGGTCACATGAGAAGGCATAGAACTTTGGTGAGCGCCTCTACTGCAACTACCGCCATTATTAGCAGCAGCCCTGAATCTCAGGGCTTGAAGAAACCCAGAAACGTGTTCAAGTTGGACTTGAATCTTCCTGCTCCTGATGATGAAGATCATGATGATCACTCGGATTCCAAGTTTCCCTTTCACTCCAAAGACTCTGTCCTTCCTTTGGTGGATTGTCATTACTGA 753 0.4967 MEDIIQEQVVMVACKDEAQILKGKRTKRHRAPSPLRLAIAMPCTTATSNDELRDSTPSSTAEEEEDMANCLILLSHGGKSSHPMVGVPNKDGAYLYQCKTCDRGFPSFRALGGHRARHKKMKTNPEHGYDDYYTSTALSLQLSSSRLSLCSANKSSSKVHGCSICGAEFSSGQALGGHMRRHRTLVSASTATTAIISSSPESQGLKKPRNVFKLDLNLPAPDDEDHDDHSDSKFPFHSKDSVLPLVDCHY 250
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju03g2574 250 SMART c2h2final6 96 118 IPR013087 -
Alju03g2574 250 SMART c2h2final6 160 182 IPR013087 -
Alju03g2574 250 MobiDBLite consensus disorder prediction 218 234 - -
Alju03g2574 250 ProSitePatterns Zinc finger C2H2 type domain signature. 162 182 IPR013087 -
Alju03g2574 250 ProSiteProfiles Zinc finger C2H2 type domain profile. 96 123 IPR013087 -
Alju03g2574 250 ProSiteProfiles Zinc finger C2H2 type domain profile. 160 182 IPR013087 -
Alju03g2574 250 Gene3D Classic Zinc Finger 93 182 - -
Alju03g2574 250 Pfam C2H2-type zinc finger 96 120 - -
Alju03g2574 250 Pfam C2H2-type zinc finger 159 183 - -
Alju03g2574 250 PANTHER ZINC FINGER PROTEIN ZAT5 48 233 - -
Alju03g2574 250 MobiDBLite consensus disorder prediction 215 234 - -
Alju03g2574 250 ProSitePatterns Zinc finger C2H2 type domain signature. 98 118 IPR013087 -
Alju03g2574 250 SUPERFAMILY beta-beta-alpha zinc fingers 95 182 IPR036236 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju03g2574 Alju-ChrAlju03 52122049 52122801 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju03g2574 20 250 C2H2 Transcription Factor Family AT5G03510 41.053 3.44e-51 167
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Alju03g2574 zf-C2H2_6 9.6e-12 CL0361