Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju03g2571 ATGGATCGTGACTGGGGTTCGAAGCCTGGCAGTGGAGGCGCTGCCTCCTCCCAGAACGAGGCCATCGACCGTCGTGAGCGTCTCCGCCGACTTGCGCTCGAGACTATTGATCTTGCTAAAGACCCCTATTTCATGCGCAATCATCTTGGCAGCTATGAGTGCAAGCTTTGTCTCACTTTGCACAATAATGAAGGGAATTATCTGGCGCACACACAAGGTAAGCGGCATCAGACCAATTTGGCTAAGAGAGCAGCTCGCGAGGCCAAAGAGGCACCTGCTCAACCTCAGCCCCACAAGCGTAAAGTCTCCGTTCGCAAGACAGTGAAGATCGGTAGACCTGGGTACCGAGTGACCAAGCAATATGATCCAGAGACAAATCAGAGATCCCTTCTTTTCCAGATTGAATATCCTGAGATTGAAGACCTAACAAAGCCAAGGCATCGATTTATGTCTTCTTATGAGCAGAGAGTGCAACCCTTTGATAAAAGATATCAGTATCTTTTGTGCGCAGCCGAACCATATGAAACCATTGCTTTCAAGGTTCCCAGCACAGAGATTGATAAGTCAACTCCAAAGTTTTTCTCACACTGGGACCCAGACACAAAGATGTTTACGTTGCAACTGTATTTCAAACCAAAGCCACCGGAGGCAAACAAACCCCAGCCTCCCTCAACAGTCAATAGCACTGCTGCACCTGGTGTCCCTCCACCGCCTCAAGCTCCTCCACCACCTCCTCCGCCGCCCCAAGGCTTACCACCTGGTGCGCCTCTTGGAAATCCTCCCAGAGCCCCTCCCCCTCCGATGCCTGGATCATTGCCGCCGCCGCCGCCGCCTCCTATTTCAAATGGCCCAAGACCGGCATATTCTATTGGCAGCAGCACAACAGCAAGTTTCAACATGGGCACTAGGCCTCCATCTCTGCCCCCTGGGCAAGGTTTTCCGGGACAACAAATGCAGGGCCAGGTTGCTCATCCTCTGCCGCCGCCGCCGCCACCTAGAATGGGCCAGTAG 1011 0.5312 MDRDWGSKPGSGGAASSQNEAIDRRERLRRLALETIDLAKDPYFMRNHLGSYECKLCLTLHNNEGNYLAHTQGKRHQTNLAKRAAREAKEAPAQPQPHKRKVSVRKTVKIGRPGYRVTKQYDPETNQRSLLFQIEYPEIEDLTKPRHRFMSSYEQRVQPFDKRYQYLLCAAEPYETIAFKVPSTEIDKSTPKFFSHWDPDTKMFTLQLYFKPKPPEANKPQPPSTVNSTAAPGVPPPPQAPPPPPPPPQGLPPGAPLGNPPRAPPPPMPGSLPPPPPPPISNGPRPAYSIGSSTTASFNMGTRPPSLPPGQGFPGQQMQGQVAHPLPPPPPPRMGQ 336
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju03g2571 336 MobiDBLite consensus disorder prediction 229 284 - -
Alju03g2571 336 FunFam Splicing factor 3a subunit 2 94 218 - -
Alju03g2571 336 MobiDBLite consensus disorder prediction 1 22 - -
Alju03g2571 336 SMART ZnF_U1_5 49 83 IPR003604 GO:0003676|GO:0008270
Alju03g2571 336 Gene3D Classic Zinc Finger 46 89 - -
Alju03g2571 336 SUPERFAMILY beta-beta-alpha zinc fingers 48 83 IPR036236 -
Alju03g2571 336 Pfam Zinc-finger of C2H2 type 52 76 - -
Alju03g2571 336 ProSiteProfiles Zinc finger matrin-type profile. 52 82 IPR000690 GO:0003676|GO:0005634|GO:0008270
Alju03g2571 336 MobiDBLite consensus disorder prediction 212 336 - -
Alju03g2571 336 Pfam Pre-mRNA-splicing factor SF3a complex subunit 2 (Prp11) 110 204 IPR031781 -
Alju03g2571 336 PANTHER SPLICING FACTOR 3A SUBUNIT 2 1 330 - -
Alju03g2571 336 Gene3D - 93 218 - -
Alju03g2571 336 MobiDBLite consensus disorder prediction 286 304 - -
Alju03g2571 336 SMART CactinC_cactus_3 89 217 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju03g2571 Alju-ChrAlju03 52112378 52114744 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju03g2571 1 286 C2H2 Transcription Factor Family AT2G32600 77.273 9.07e-134 380