Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju03g2560 ATGGGATCTAGCAGAATCCTCTTCTGGCTACTTGCCTTTTTCACTTTTTCCCTTTCCATAATGATTTTTTGTTATTACAGTACGCCACCTTCCCTCACCTCCATCTCTTCCATTAATCCTGATCATCAGAGTAGTTTCAAGCAACATGCGATCTTAAGCAGGATTATAAAGCTGAGTGGCGCTGAAGACTTTGTGTCTCTCGTAACAAGACTTGCCAGGAGGCTTCACCACCCAAGGAAGCCCAAGGAAAAATGTGACAGTTCCACCTGGGATTCTGATCTTATTTTGGACTACAATGTGAGCCTTGTTTTAACGGTTAGTTTAAAGGGTTGTGGAAATTTTAGCAGCATACAAAAAGCAGTGAACGCTGTTCCTGAATCAAGGCCTGATAAAACCCTCATCATCATTGATTCTGGCATATACAGAGAGAAGGTCGTGGTGGAGCCAAACAAAACAAATTTGATATTGCAAGGTCAAGGATATCTGAACACAATCATAGAATGGAATGATTCTGCCAATTCTACAGGAGGGACATTTAATAGTTATTCAGTTGGAATCTTTGCTTCTAAGTTTATCGCTTACAATATTAGTTTTAAAAATACGGCTCCAGCACCATCACCTGGTACGACCGGAGCACAAGCCGTGGCGCTAAGAGTGAGTGGCGACGAAGCAGCATTCTACGGCTGTGGAATGTATGGTGCTCAAGACACACTCAATGATGATAGTGGAAGGCATTACTTTAAAGAATGTTTCATTCAAGGATCCATTGATTTCATATTTGGGAATGCCAAATCTCTTTATCAGGATTGTACTATAAACACTATATCAACAGAAGAAGGAACTACAATTACTGGGGCCATCACAGCTCAAGCGAGACAGTCAGAAAAGGAAGAAACTGGGTTTTCATTTGTGAATTGTAAGATCGATGGAAGAGGAAAAGTGTGGCTTGGAAGAGCATGGGGAGCTTATGCCACTGTGGTATTTTTGAAAACATACATGTCTGATGTTGTAACTCCTGAAGGATGGAACGATTGGTCTAATTCTACAAGAGACATGACTGTGTTTTTTGGGGAATATCATTGTTTTGGAGGTGGAGCCAACTACTCGTCTAGAGTCTCGTATGGAAAGCAGCTTAAAGACAATGAAGCTGCCCCTTTCATGAATGTTTCATATATTGATGGGAACGACTGGCTTCTCAATCATCCCAATTAA 1212 0.4117 MGSSRILFWLLAFFTFSLSIMIFCYYSTPPSLTSISSINPDHQSSFKQHAILSRIIKLSGAEDFVSLVTRLARRLHHPRKPKEKCDSSTWDSDLILDYNVSLVLTVSLKGCGNFSSIQKAVNAVPESRPDKTLIIIDSGIYREKVVVEPNKTNLILQGQGYLNTIIEWNDSANSTGGTFNSYSVGIFASKFIAYNISFKNTAPAPSPGTTGAQAVALRVSGDEAAFYGCGMYGAQDTLNDDSGRHYFKECFIQGSIDFIFGNAKSLYQDCTINTISTEEGTTITGAITAQARQSEKEETGFSFVNCKIDGRGKVWLGRAWGAYATVVFLKTYMSDVVTPEGWNDWSNSTRDMTVFFGEYHCFGGGANYSSRVSYGKQLKDNEAAPFMNVSYIDGNDWLLNHPN 403
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju03g2560 403 PANTHER ACYL-COA THIOESTER HYDROLASE YBHC-RELATED 96 398 - -
Alju03g2560 403 Pfam Pectinesterase 105 395 IPR000070 GO:0030599|GO:0042545
Alju03g2560 403 FunFam Pectinesterase 98 403 - -
Alju03g2560 403 SUPERFAMILY Pectin lyase-like 101 398 IPR011050 -
Alju03g2560 403 Gene3D - 98 401 IPR012334 -
Alju03g2560 403 ProSitePatterns Pectinesterase signature 2. 252 261 IPR033131 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju03g2560 Alju-ChrAlju03 52007354 52009674 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju03g2560 96 398 Carbohydrate Esterase AT1G05310 53.595 1.85e-118 348
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Alju01g1454 01 11532845 11542490 Alju03g2560 03 52007354 52009674 CCT
Alju03g2560 03 52007354 52009674 Alju03g2560 03 52007354 52009674 ECH