Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju03g2559 ATGAAGCAAGACTTCGAATCACTGTCTGTTTCGGAAGGCCAATCTCATGATGCATTCGTCACAAGGTCGGCTTCGGAAGCTCAATCTGGTTCTCAGACGATGCCCAATGCTCAGGTACCTGAGCATGATAGTTCTAGGATGGTTAGAGGTGCTGTGGTGAATGGTTATATTGTTTATACTCGACAAAGGAAGGATCGTCGTTTGTGTGATTGGTCCTCTGAGAATGAAAAGCTTAAGAGGCTAAAGACCTGTGTAGAACCGCAAGCAAATGTACACATTCGAGGGGCGGAAGGTGGAGGCGGTGTAGAGATACACAATGTAGAACATAGAATAGAAATTGGAGACAGTTGCAATATGGAGAAGTCTAAAAGCTACAATGAGCTTGAGAACAAGTCCGCACAAAATCGTGCTGGGGAAGGTGGCTTCCATGATGTTCCTGTAGTGATTTCTAACGGTGATGGTGTACAGAAAGATGTCGTAGTTAAGACATTGAAGTGGTATTCTCGATCAGCTTTGAAAACAAAGGTTCGCTCTTCTGATGAGACGGCAAGTGTTTCAGAATCTTCCCGGACTGAAAATTCCAAATCAGATGGGAAGGTGAACGCTGCCCCCAGTGCATTAACAGCCCCAAGAAACAAGTTGGAATTGAAGATGTCGAAAAAGATTGTGCTCAACAAGAAGCCTATGACCGTCAAGGAGCTCTTCGATACCGGTCTACTGGATGGGGTTCCTGTAGTTTACATGGGCGGAAAGAAGGCTTCGGGACTGCGAGGCATTATTAAAGATGGGGGAATATTGTGTTCTTGCTGTCTGTGCAATGGACGCAGGGTTATTCCACCTTCCCAATTTGAGATTCATGCATGCAAAGCGTACAAGCGAGCAGCACAATACATCTGCCTGGAAAATGGGAAGAGCCTGCTTGAGCTATTGAGAGCTTGCAGAGGAGCTCCCTTACATACTCTGGAGGCGACAATTCAAAACGTGGTTTGTTCTCCACCCGATGAAAAGTATTTCACATGTAAAATGTGCAAGGTATGTTTTCCTCCTTCCTGTGTGGAAAGAGTAGGGTCTATATGCAGTTCTTGCAAGGAGTCAAAGGAATCTCAAGAAAGTTCTATTGATAAAGTGGGCAAAAGAGTCAGGTCCCCTAGACCGCTCTCTGTCACTAAGCAATCTGATACTTCTGAGAAGTGTATCTCTTCAAAGATTAAGAGACACAGGAAGAAAAGAACAAAGTCACCAAAATGGGTTAGCCGTGCAAAGTCTTCCAAGAATTCTTCGATGTCCATCCTTTCACGAAAGAAGAGTCTTTGGAGGATGAAAAAAAAGTCCTCAAAATTGTCAGTAAAATTGAAGACTGCAAGAACTACTTCAAATTCACTGCTTTTATCTTCACCAAACAAGAGTCACTGGAGGATCACTAAGAAGCACCAGCAGTTGCATAAGTTAGTCTTTGAGGAAGGTGGATTGCCTGATGGAGCTGAAGTAGCTTATTATGCGCGTGGACAGAAACTGCTTGAGGGATACAAAAAGGGCTTTGGAATAATGTGTCGATGCTGCAACTCTGAGGTCAGCCCCTCACAGTTTGAGGTCCATGCAGGCTGGGCTTCCCGCAAGAAACCTTATGCATACATCTACACATCAAATGGGGTGTCTCTCCATGAGTTGGCTATATCTCTCTCAAAAGATCGCAAATACTCTGCAAAGGATAATGATGATTTATGCATTATTTGTTGGGATGGCGGAGATCTGTTGCTTTGTGATGGATGCCCAAGGGCTTTTCATAAAGAATGTGCATCTCTATCGAGTATTCCGCGTGGTAATTGGTACTGTAAGTTTTGCCAAAACATGTTCCAAAGAGAAAGGTTTGTGGCGCACAACGCTGATGCTGTGGCGGCTGGAAGGGTTGAAGGAGTTGATCCTATTGAGCAGATAACCAAGAGATGTGTGCGCATTGTTGAAGACGTTGATGCTGAGCTCAATGGATGTGCTTTATGCAGGGGTTGTGACTTCAGCAGATCTGGATTTGGTCCACGAACAATAATAATCTGTGATCAGTGTGATAAAGAATTTCATGTGGGCTGCTTGAGGGATCATAAAATGTCATTTTTGAAGGAATTGCCAGAAGGGGATTGGTTTTGTTGCCATGATTGCTCAACCATACATTCTACTTTTCAGAACCTCCTGGTTAGGGGGGCTGAGAAACTTCCAGAACCTCTCTTGGATGTTATAAAGAAGAAGCAAGAGGAAAAAGGTTTAGAATCCCTTAGTGATATTGATGTGAAATGGAGGATTCTTAAGGGCAAAATTGCTTCTCCAGAAACTAGGCCATTTCTTTTGCAGGCTATCTCAATATTTCATGAATGCTTTGATCCTATAGTTGATTCAATTACTGGACGCAATCTTATTACGGCCATGATATATGGAAGGACTGTGCGGAGACAAGAGTTTGGAGCAATGCATTGTGCCATATTAATGGTCAATTCAACTGTGGTATCTGCTGGCTTGCTTCGAATTTTTGGCAGTGATCTTGCAGAACTCCCCTTAGTTGCAACTCGTAGCGTTAACCACGGAAAGGGGTACTTTCAAATACTATACTCCTGCATTGAGAAATTGCTGGTTTCCTTAAACGTGAAGAACCTTGTGTTGCCAGCCACCGCCAGTGCAGAGTCCATTTGGATTGAGAAATTTGGGTTCATAAAGATGACGCCAGATGAGCTTAGCAACTACAGAAAGAGCTACCAGCAGATGGTGATATTTCAAGGGACATCCATGCTTCATAAAACGCTCACTTCTTGTCCAGATATCAAAAGTTCATCATGA 2823 0.4357 MKQDFESLSVSEGQSHDAFVTRSASEAQSGSQTMPNAQVPEHDSSRMVRGAVVNGYIVYTRQRKDRRLCDWSSENEKLKRLKTCVEPQANVHIRGAEGGGGVEIHNVEHRIEIGDSCNMEKSKSYNELENKSAQNRAGEGGFHDVPVVISNGDGVQKDVVVKTLKWYSRSALKTKVRSSDETASVSESSRTENSKSDGKVNAAPSALTAPRNKLELKMSKKIVLNKKPMTVKELFDTGLLDGVPVVYMGGKKASGLRGIIKDGGILCSCCLCNGRRVIPPSQFEIHACKAYKRAAQYICLENGKSLLELLRACRGAPLHTLEATIQNVVCSPPDEKYFTCKMCKVCFPPSCVERVGSICSSCKESKESQESSIDKVGKRVRSPRPLSVTKQSDTSEKCISSKIKRHRKKRTKSPKWVSRAKSSKNSSMSILSRKKSLWRMKKKSSKLSVKLKTARTTSNSLLLSSPNKSHWRITKKHQQLHKLVFEEGGLPDGAEVAYYARGQKLLEGYKKGFGIMCRCCNSEVSPSQFEVHAGWASRKKPYAYIYTSNGVSLHELAISLSKDRKYSAKDNDDLCIICWDGGDLLLCDGCPRAFHKECASLSSIPRGNWYCKFCQNMFQRERFVAHNADAVAAGRVEGVDPIEQITKRCVRIVEDVDAELNGCALCRGCDFSRSGFGPRTIIICDQCDKEFHVGCLRDHKMSFLKELPEGDWFCCHDCSTIHSTFQNLLVRGAEKLPEPLLDVIKKKQEEKGLESLSDIDVKWRILKGKIASPETRPFLLQAISIFHECFDPIVDSITGRNLITAMIYGRTVRRQEFGAMHCAILMVNSTVVSAGLLRIFGSDLAELPLVATRSVNHGKGYFQILYSCIEKLLVSLNVKNLVLPATASAESIWIEKFGFIKMTPDELSNYRKSYQQMVIFQGTSMLHKTLTSCPDIKSSS 940
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju03g2559 940 SUPERFAMILY FYVE/PHD zinc finger 561 619 IPR011011 -
Alju03g2559 940 Pfam Tify domain binding domain 508 558 IPR032308 -
Alju03g2559 940 Pfam Tify domain binding domain 258 313 IPR032308 -
Alju03g2559 940 PANTHER AUTOIMMUNE REGULATOR 12 929 - -
Alju03g2559 940 SUPERFAMILY FYVE/PHD zinc finger 656 718 IPR011011 -
Alju03g2559 940 SUPERFAMILY Acyl-CoA N-acyltransferases (Nat) 818 903 IPR016181 -
Alju03g2559 940 MobiDBLite consensus disorder prediction 1 46 - -
Alju03g2559 940 CDD PHD1_AIRE 574 614 - -
Alju03g2559 940 ProSiteProfiles Zinc finger PHD-type profile. 572 617 IPR019787 -
Alju03g2559 940 MobiDBLite consensus disorder prediction 177 204 - -
Alju03g2559 940 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 660 721 IPR013083 -
Alju03g2559 940 MobiDBLite consensus disorder prediction 401 417 - -
Alju03g2559 940 MobiDBLite consensus disorder prediction 177 201 - -
Alju03g2559 940 MobiDBLite consensus disorder prediction 373 426 - -
Alju03g2559 940 FunFam Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger domain 561 638 - -
Alju03g2559 940 Pfam PHD-finger 575 616 IPR019787 -
Alju03g2559 940 Gene3D - 769 928 - -
Alju03g2559 940 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 560 643 IPR013083 -
Alju03g2559 940 ProSitePatterns Zinc finger PHD-type signature. 575 614 IPR019786 -
Alju03g2559 940 SMART PHD_3 574 615 IPR001965 -
Alju03g2559 940 SMART PHD_3 662 719 IPR001965 -
Alju03g2559 940 MobiDBLite consensus disorder prediction 1 40 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju03g2559 Alju-ChrAlju03 51994136 52001725 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju03g2559 44 932 PHD Transcription Factor Family AT2G36720 45.803 0.0 803
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Alju03g2559 TDBD 5.4e-13 No_clan