Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju03g2549 ATGGCGGAATCAGCATCTGGTGACTCCTCCAACACAACTCCGCCTCCGGAGAGAAGACCGGCGGTTACCGAGCATAAAAGTTGGGCCGATGAAGCTGAGGAAGAAGTCCCAGAAGAAACGAATGACGCCCCCAGTTCATCATCAGTGTCCTCGCTTAACGTTGACGCATTAGCCATCGACGAGAATAAGAAGGCTGCTACTAAGTTCTTGGATGAACCGGAGGACTCCAACATTCAAGCGGTTACTTCTGGTGATACTCCATACACCTCAGCGAGCACCTTTGAAGATTTGAATCTCTCTCCAGAGCTGCTAAAAGGATTGTATGTTGAGATGAAATTTCAGAAGCCTAGCAAAATTCAAGCTATCAGTTTGCCAATGATCTTGAGCCCTCCTCATAAGGATCTGATTGCACAGGCACATAATGGTTCAGGCAAGACAACATGTTTTGTGCTTGGGATGCTAAGTCGCGTTGACCCCAACCTGAAGGCTCCTCAAGCTCTCTGCATTTGTCCAACTAGGGAATTAGCTATTCAGAATACCGAAGTTCTTCAAAAGATGGGGAAATACACTGGCATTATTTCAGAATGTGCCATACCAGCAGACAGCAGAGATTATATTCCTATAGCAAAACGGGCACCAATTATGGCACAAGTAGTAATTGGGACCCCTGGAACAATTAAGAAGTGGATAACACATAAGAAACTGAGTGCAGTCAGATTAAACATTCTTGTCTTCGATGAGGCTGATCAAATGCTTGCAGAGGATGGTTTTAAAGATGATTCTTTGAGGATAATGAAAGATATAGAAAGAGTCAATGCTAACTGTCAGGTTCTTCTGTTTTCTGCTACATTTAATGAAATTGTCAAGAATTTTGTTTCAAGGACAGTTAAGAAGGATCACAATCAACTTTTTGTGAAGAAAGAAGAGCTATCTTTAGAGGCAGTGAAGCAATACAGGGTGAATTGTCTTGATGAACTCTCTAAGGTTGAAGTGATCAAAGATTACATCTTTGAAATAGGAGAGAATGTGGGCCAGACTATCATATTTGTGCGCACAAGAAATAGTGCAAGCATGTTGCACAAATCACTTGCTGAATTGGGCTACGAGGTCACTTCTATTCAAGGCGCTCTTCAGCATGAGGAAAGAGATAAGATTGTCAAGGAGTTCAGAGATGGTTTGACTCAAGTTCTGATATCAACTGATGTTCTTGCTCGAGGCTTTGATCAACAGCAGGTTAATTTGGTTATTAATTATGATCTTCCAGTGAAACATATTGTGGGGTATGCTCGGGAACAGGAGCCCGATTATGAGGTGTATTTGCACAGGGTTGGGAGGGCTGGACGTTTTGGGCGCAAGGGGGCTGTATTTAACCTCATATGTGGTGAAAGGGATGCAAATCTCATGGCGAAGATTGAGCAGCACTTTGGCACCCATGTAACTGAGGTCCGAGCTGAAAGCGTCGAAGACTATAAAGGAGCTCTTAGGGAGGCTGGTTTATTGCAGTGA 1506 0.4349 MAESASGDSSNTTPPPERRPAVTEHKSWADEAEEEVPEETNDAPSSSSVSSLNVDALAIDENKKAATKFLDEPEDSNIQAVTSGDTPYTSASTFEDLNLSPELLKGLYVEMKFQKPSKIQAISLPMILSPPHKDLIAQAHNGSGKTTCFVLGMLSRVDPNLKAPQALCICPTRELAIQNTEVLQKMGKYTGIISECAIPADSRDYIPIAKRAPIMAQVVIGTPGTIKKWITHKKLSAVRLNILVFDEADQMLAEDGFKDDSLRIMKDIERVNANCQVLLFSATFNEIVKNFVSRTVKKDHNQLFVKKEELSLEAVKQYRVNCLDELSKVEVIKDYIFEIGENVGQTIIFVRTRNSASMLHKSLAELGYEVTSIQGALQHEERDKIVKEFRDGLTQVLISTDVLARGFDQQQVNLVINYDLPVKHIVGYAREQEPDYEVYLHRVGRAGRFGRKGAVFNLICGERDANLMAKIEQHFGTHVTEVRAESVEDYKGALREAGLLQ 501
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju03g2549 501 SMART helicmild6 357 450 IPR001650 -
Alju03g2549 501 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 126 302 IPR014001 -
Alju03g2549 501 MobiDBLite consensus disorder prediction 1 17 - -
Alju03g2549 501 Pfam DEAD/DEAH box helicase 118 290 IPR011545 GO:0003676|GO:0005524
Alju03g2549 501 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 331 491 IPR001650 -
Alju03g2549 501 MobiDBLite consensus disorder prediction 1 53 - -
Alju03g2549 501 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 92 121 IPR014014 GO:0003724
Alju03g2549 501 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 60 468 - -
Alju03g2549 501 Pfam Helicase conserved C-terminal domain 329 450 IPR001650 -
Alju03g2549 501 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 164 465 IPR027417 -
Alju03g2549 501 SMART ultradead3 112 318 IPR014001 -
Alju03g2549 501 CDD SF2_C_DEAD 315 459 - -
Alju03g2549 501 CDD DEADc_DDX19_DDX25 99 298 - -
Alju03g2549 501 Gene3D - 312 494 IPR027417 -
Alju03g2549 501 Gene3D - 70 309 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju03g2549 Alju-ChrAlju03 51940033 51943437 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju03g2549 85 482 Eukaryotic Initiation Factors Gene Family AT1G72730 36.364 5.16e-71 230