Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju03g2547 ATGGCGGTTCCTCAGACGGCCGCCGTCGCACAGGCTTCGCTTTATGTTGGCGACCTCCACCCTGACGTCAGCGATCGACAGCTGCGCGAGGTGTTCTCGGCGTTTAATAGCACTTCTGTCCGGATCTGTAGAGACTCCTCTAACGGCAGGTCACTCTGTTATGGCTATGTCAACTTCGCCTCTCCCCAAGATGCTACTCGTGCTCTTGAGGTGAAGAATCATTCTAAACTGAACGGAAAAATGATAAGGGTCATGTGGTCACATCGTGACCCCGAAGCAAGAAAAAGCGGCAAAGCAAACGTATTTGTTAAGAACTTAGCTGAACCCATAGATAATGCGGAATTACACGAGCTGTTTCAAAACTTCGGGAAAATTTTGTCCAGCAAAATTGCCATCTCTGAAGATGGGAAGAGCAAAGGGCATGGCTTCGTTCAATTTGAGTCAGAGGACTCTGCAAATGCTGCCATTGAAAAATTGAATGGCTCCACCGTTAGAGATAAACAAATATATGTTGGTAAGTTTGTCAAAAAAAGTGAACGCGTCTTGCCTGGTCCTGATCCCGAGTTCACAAATTTGTTCATGAAAAATTTGGACCCAGAGATTACAGAAGAGCTTCTGCAGGAAAAGTTCGCTCATTTTGGCAACATTGTTAATTTGGCTATTGCTAAGGACTACAATGGAGTATCAAAGGGTTTTGGCTTTGTAAACTATGATAATCCAGACGATGCTAAAAGGGCAATGGAAACCATGCATGGATCACGACTGGGTTCGACGATTATGTATGTAGCCAGAGCACAAAAGAAGGCTGAGCGTGAAAAACTCTTGCGCCGTCAGTTTGAGGAGAAACGTAAGGAACAGATCTTGAAATATAAGGGATCAAACATTTATGTGAAAAACATTGACGATGACGTCAATGACGAAGAACTAAGAGATTGTTTTAGTTCATGCGGCACGATAACATCCGCCAAAGTTATGCGGGACGGCAAAGGAATAAGCAAGGGGTTTGGTTTTGTCTGTTTCTCCACTCCCGAGGAGGCCAATAAAGCTGTGAACAATTTCCATGGATGCATGCTTCATGGTAAACCGCTATATGTTGCTATTGCTCAGAGGAAGGAAGATAGGCTAGCACGACTAAAGGTCCAGCATTCACAGGGAATGGGAATAGCAGGATTAGCTGGACCTTCAACCGCTGTAATACATGGTGGATATCCTCCTTACTACTACGCTGCTACTGATGTTGTTTCACAGCTGCCACATCGAACCGGGCTAGTATATGAATCGCTGGGACTTAGGCCTGCAGGATGGAGTCTTAACGGCTTTGCACCTCCTACTTCACCAGTTCCACAAGCTCTAGTTTCTGTTCCTGCTGCTTCTATGAAGCCGCACAGACAAAACAGGAGCAGGATGAATGGGCGGGCAATTTCGTGGGGTTTGGGCACGTTAATGCCTCAGGGACAACAACCTTCTCAATCAATGGCCTCACCAAAAGAATCAGTTATTACTCAGCAGTGGACTGGGCAGACTAAGTATGCTGGGAGTCAAGAATTGAAAATGCTCCATTTCATGCTTGGTGCTGCTACTCCTGAGCAGCAAAAGCAACTCCTTGGCGAGTATATTTACCCACTGGTCCAGAAAATCAGGCCTGGCCTGGCCGCGAAGATTACTGGGATGCTCTTGGAGATGGAAATTGGAGATTTGCTGCTTCTCCTGGAATCTCCAAGGTCTCTTTTTGCCAAGGTGGAAGAAGCTGTGCAGGTGCTTAACAACTCCAAGACTGGATTGTCGGCCCAGGATGCACTCCATCCACGTTACTTTTCAGCTGACGTTGCTGTGAACTGA 1839 0.4638 MAVPQTAAVAQASLYVGDLHPDVSDRQLREVFSAFNSTSVRICRDSSNGRSLCYGYVNFASPQDATRALEVKNHSKLNGKMIRVMWSHRDPEARKSGKANVFVKNLAEPIDNAELHELFQNFGKILSSKIAISEDGKSKGHGFVQFESEDSANAAIEKLNGSTVRDKQIYVGKFVKKSERVLPGPDPEFTNLFMKNLDPEITEELLQEKFAHFGNIVNLAIAKDYNGVSKGFGFVNYDNPDDAKRAMETMHGSRLGSTIMYVARAQKKAEREKLLRRQFEEKRKEQILKYKGSNIYVKNIDDDVNDEELRDCFSSCGTITSAKVMRDGKGISKGFGFVCFSTPEEANKAVNNFHGCMLHGKPLYVAIAQRKEDRLARLKVQHSQGMGIAGLAGPSTAVIHGGYPPYYYAATDVVSQLPHRTGLVYESLGLRPAGWSLNGFAPPTSPVPQALVSVPAASMKPHRQNRSRMNGRAISWGLGTLMPQGQQPSQSMASPKESVITQQWTGQTKYAGSQELKMLHFMLGAATPEQQKQLLGEYIYPLVQKIRPGLAAKITGMLLEMEIGDLLLLLESPRSLFAKVEEAVQVLNNSKTGLSAQDALHPRYFSADVAVN 612
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju03g2547 612 Gene3D - 100 172 IPR012677 -
Alju03g2547 612 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 190 267 IPR000504 GO:0003723
Alju03g2547 612 Gene3D - 175 276 IPR012677 -
Alju03g2547 612 Gene3D - 3 99 IPR012677 -
Alju03g2547 612 SUPERFAMILY PABC (PABP) domain 482 598 IPR036053 GO:0003723
Alju03g2547 612 FunFam Polyadenylate-binding protein 100 180 - -
Alju03g2547 612 SUPERFAMILY RNA-binding domain, RBD 12 96 IPR035979 GO:0003676
Alju03g2547 612 ProSiteProfiles Poly(A)-binding protein C-terminal (PABC) domain profile. 515 592 IPR002004 GO:0003723
Alju03g2547 612 Gene3D - 512 592 - -
Alju03g2547 612 SMART rrm1_1 13 85 IPR000504 GO:0003723
Alju03g2547 612 SMART rrm1_1 191 263 IPR000504 GO:0003723
Alju03g2547 612 SMART rrm1_1 100 172 IPR000504 GO:0003723
Alju03g2547 612 SMART rrm1_1 294 366 IPR000504 GO:0003723
Alju03g2547 612 SUPERFAMILY RNA-binding domain, RBD 291 385 IPR035979 GO:0003676
Alju03g2547 612 Coils Coil 262 282 - -
Alju03g2547 612 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 99 176 IPR000504 GO:0003723
Alju03g2547 612 SMART poly_2 527 590 IPR002004 GO:0003723
Alju03g2547 612 CDD RRM4_I_PABPs 292 370 - -
Alju03g2547 612 Gene3D - 277 385 IPR012677 -
Alju03g2547 612 NCBIfam polyadenylate binding protein, human types 1, 2, 3, 4 family 12 588 IPR006515 GO:0003723
Alju03g2547 612 FunFam Polyadenylate-binding protein 181 275 - -
Alju03g2547 612 FunFam Polyadenylate-binding protein 276 384 - -
Alju03g2547 612 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 293 370 IPR000504 GO:0003723
Alju03g2547 612 SUPERFAMILY RNA-binding domain, RBD 100 271 IPR035979 GO:0003676
Alju03g2547 612 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 295 363 IPR000504 GO:0003723
Alju03g2547 612 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 14 82 IPR000504 GO:0003723
Alju03g2547 612 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 192 258 IPR000504 GO:0003723
Alju03g2547 612 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 101 169 IPR000504 GO:0003723
Alju03g2547 612 Pfam Poly-adenylate binding protein, unique domain 523 587 IPR002004 GO:0003723
Alju03g2547 612 PANTHER RNA BINDING PROTEIN 12 73 - -
Alju03g2547 612 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 12 89 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju03g2547 Alju-ChrAlju03 51910227 51914620 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju03g2547 12 610 Eukaryotic Initiation Factors Gene Family AT2G36660 51.656 0.0 571
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Alju01g1434 01 11375425 11379865 Alju03g2547 03 51910227 51914620 CCT
Alju03g2547 03 51910227 51914620 Alju03g2547 03 51910227 51914620 ECH