LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Alju03g2545	ATGTGTCAACTGTTGATAATCCCAAATCCCAATGCGTTTGACGACAGAGTAGTAAACACTAAACAGCTTCAAAGGCATCATACCAATATGGAAGATAACGACAATGCCATCCTTCTCAATAGTGTAGGTTGGAGCCTTGGACTTCATCCTGTCTACATGAAACCTTTGCTTGTGTTTATGGCATCTAGTCATTCTCCTTGTTCATGCAGAATGATCACTGAACCAAAAGTAAGTTCACGTTTCCAACTTAGCTATGTCCTCCTTCTTTTCTTTTTCCTCAGTCATCGTTGTACTTCTCAAAAGACTTGCCCAAACTGTGGCTCCTTACAAATTTCATATCCTTTAAGCACAGACCCTACCTGTGGTGATCCATCCTACAGCCTTCACTGTGATACCAAATCTAAAAAGCTCTACTTTAACACCCTCAATGGAAGTTCCTATTCTGTTGTCAGAATTTTGCCTTCGATCCAACGCTTGGTGGTGCAGCCATCACCTTGGCTTTCTAGTTCATGTGTTACTCAAGACATGCCTGTAAGCGGTGGCCTCTGGTTAAACCAGTCACTTCCTTTCAAAATAACTTCATCAAACACAGTCTTCCTGTTTAACTGCTCGCCTCGCCTGTTAGTTTCTCCTCTCAATTGCACTTCTTCTAGTCTTTGTCACCGTTACTTGGAGAGCTCAGGACATGTTGAAAGTAAAAGAGCTTTTCAGTGTGCCAGTGGTCTTGGCCCTTGTTGCACCTTTGTTGCAGGTGGGATGCCTTCAGCATACAAGATACGCCTTCACAGCTCTGGATGTAAAGCATTCAGAAGCATCCTTCATTTAGATGCAGACAAGGCTGCTTACCAGTGGGAGGAAGGCCTTGAAATTCAATGGGCTTCTCCTCCTGAACCTCTCTGCAGGACCCAAAAAGATTGCTCTGGAGCTTCTATTTGTTCCCAAGCTGAAAAAAATGGCGTCTTTCGCTGTCTTTGTAAGGAAGAATACCATTGGGACCCTATGGCTGCAACTTGCTTGAAGAACAAGAAAAAGTCTAAATCGCATGTCAGTTTAACAGTCTCGGTTGTGGTTGTAACATTTTTCTGTCTAGCCACAGTTATGGCCATCATCTTAAGGAGGTCCTGGAAGCTACCTTACGGGTCAAAGCAGGCCAAGACAATAGAAGATGTGATAAAGTCCAATTCTGGAGAGACACCTGCTAGGATGTTTAAACTGAAGGAGGTGATGAAAATAACGAATGGATTTTCTAAAGACAGAGTTTTGGGGAACGGTGGGTTTGGGGAAGTCTACAAAGGTGAACTTCAAGATGGGGCAGTAGTGGCTGTGAAGAAAGCTAGATTGGGCAACCTCAAAAGCATCCAGCAGATACTAAACGAGGTTGCAATTCTTTCTCAAGTCAATCACAAGAACCTAGTCAGACTCCTGGGTTGCTGTGTAGAATCTGAGCAGCCTCTGATGATCTATGAGTACATCTCAAATGGGACCCTCCATGATCATCTTCATGGCAGGTATTCCAACTTCCTAGAATGGAAAACGAGGCTGATGGTTGCTTTTCAAACTGCTGAAGCATTGGCATATCTTCATTCTGCTGCACACACTCCCATTTACCACAGAGATGTGAAGTCCACAAACATACTGCTAGATGATGAATTTAACGCCAAAGTTGCAGATTTTGGGCTCTCCAGATTGGCTAACCCAGGACTTAGTCATGTATCAACCTGTGCTCAGGGAACATTAGGTTACTTGGATCCTGAGTATTACCGCAACTACCAGTTAACTGATAAAAGTGATGTTTATAGTTATGGGGTTGTTTTGCTGGAGCTTTTGACGTCCCAGAAGGCCATAGATTTCTCAAGAGAGCAAGATGATGTAAACCTAGCAATTTATGTTAGTCAACATGCCAGCAACGGGTCAATCATGGAACTGGTAGATCAGAGGCTCCTACTGTCTAAGGAACCAGCTGATGATAAAGTGAAAACAAGCATACAACTTTTCTCAGAGCTGGCACTCAGCTGCCTGAGGGAAAAGAAAGGCGAAAGGCCAAGTATGAAGGACATTGTTCAACACCTTCAATGCATCATTAAAATTGCAGATCAAGTGAGGAATAGTGATGATGTGTCAGCTTAA	2127	0.4335	MCQLLIIPNPNAFDDRVVNTKQLQRHHTNMEDNDNAILLNSVGWSLGLHPVYMKPLLVFMASSHSPCSCRMITEPKVSSRFQLSYVLLLFFFLSHRCTSQKTCPNCGSLQISYPLSTDPTCGDPSYSLHCDTKSKKLYFNTLNGSSYSVVRILPSIQRLVVQPSPWLSSSCVTQDMPVSGGLWLNQSLPFKITSSNTVFLFNCSPRLLVSPLNCTSSSLCHRYLESSGHVESKRAFQCASGLGPCCTFVAGGMPSAYKIRLHSSGCKAFRSILHLDADKAAYQWEEGLEIQWASPPEPLCRTQKDCSGASICSQAEKNGVFRCLCKEEYHWDPMAATCLKNKKKSKSHVSLTVSVVVVTFFCLATVMAIILRRSWKLPYGSKQAKTIEDVIKSNSGETPARMFKLKEVMKITNGFSKDRVLGNGGFGEVYKGELQDGAVVAVKKARLGNLKSIQQILNEVAILSQVNHKNLVRLLGCCVESEQPLMIYEYISNGTLHDHLHGRYSNFLEWKTRLMVAFQTAEALAYLHSAAHTPIYHRDVKSTNILLDDEFNAKVADFGLSRLANPGLSHVSTCAQGTLGYLDPEYYRNYQLTDKSDVYSYGVVLLELLTSQKAIDFSREQDDVNLAIYVSQHASNGSIMELVDQRLLLSKEPADDKVKTSIQLFSELALSCLREKKGERPSMKDIVQHLQCIIKIADQVRNSDDVSA	708

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Alju03g2545	708	Pfam	Wall-associated receptor kinase galacturonan-binding	103	158	IPR025287	GO:0030247
	Alju03g2545	708	FunFam	Wall-associated receptor kinase-like 20	491	703	-	-
	Alju03g2545	708	PANTHER	LEAF RUST 10 DISEASE-RESISTANCE LOCUS RECEPTOR-LIKE PROTEIN KINASE-LIKE 1.4	84	695	IPR044652	GO:0004672
	Alju03g2545	708	Gene3D	Phosphorylase Kinase; domain 1	379	490	-	-
	Alju03g2545	708	FunFam	Adenine nucleotide alpha hydrolase-like domain kinase	389	490	-	-
	Alju03g2545	708	SUPERFAMILY	Protein kinase-like (PK-like)	392	691	IPR011009	-
	Alju03g2545	708	CDD	STKc_IRAK	421	691	-	-
	Alju03g2545	708	SMART	serkin_6	415	693	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Alju03g2545	708	Pfam	Protein kinase domain	416	689	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Alju03g2545	708	ProSitePatterns	Protein kinases ATP-binding region signature.	421	444	IPR017441	GO:0005524
	Alju03g2545	708	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	535	547	IPR008271	GO:0004672\|GO:0006468
	Alju03g2545	708	ProSiteProfiles	Protein kinase domain profile.	415	692	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Alju03g2545	708	Gene3D	Transferase(Phosphotransferase) domain 1	491	707	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Alju03g2545	Alju-ChrAlju03	51886524	51891525	Dispersed/Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Alju03g2545	103	699	Receptor kinase-like Gene Family	AT5G02070	47.200	0.0	530

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_WAK_LRK10L-1	Alju03g2545		Pkinase	4.6e-50	CL0016