Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju03g2536 ATGGAATGGAATGGAAGCATCAGACCCTTTGTTCCTCGAGCTGAGTCTTCCTTAAGTTTCCTCTACAACTATAACTGCAGCCCATATCCAGGAATGGAAGTGAAACATGCAGCAGCAGCATCACAAGGGTTGATTCCGGATATGGAGAAAATAAAGTATGGGAACCAGATGGAGAAGAAGAAGCGACTGACTAGCGAGCAGCTTGAGTCACTGGAGAGGAGCTTCCAGGAGGAAATAAAGTTGGACCCTGACAGGAAGATGAAGCTCTCAAGGGAATTAGGGCTGCAGCCTCGCCAGATTGCTGTATGGTTTCAAAATAGGCGTGCTAGGTGGAAGGCTAAGCAGCTGGAGAACTTGTATGATGCCCTCAAACAAGAATTTGATGCTATCTCTGAGGAAAAACAGAGGCTTCAAGAAGAGGTTGTGAAGTTGAAGGCAATACTAAGAGAGCAAGCTTCAAAGACACAAGTTTCTGCAGGTTACACAGAAGTTTCTGGGGAAGAAACAGTGGAAAGCACGTCAGAGGCAGCACTGCGAGGCCCTAACAAGCAGCCACGGGGAATGACGAGCCATCATCATCAGCATCAGCAGAATGTTGCAGAAGCCAATTGTTCTTTCACTGTAGAGGATTATACCACTGTTTCACTGCCCTACTGGTCCGCACTTGTGCCTTATTATCCATAA 684 0.4678 MEWNGSIRPFVPRAESSLSFLYNYNCSPYPGMEVKHAAAASQGLIPDMEKIKYGNQMEKKKRLTSEQLESLERSFQEEIKLDPDRKMKLSRELGLQPRQIAVWFQNRRARWKAKQLENLYDALKQEFDAISEEKQRLQEEVVKLKAILREQASKTQVSAGYTEVSGEETVESTSEAALRGPNKQPRGMTSHHHQHQQNVAEANCSFTVEDYTTVSLPYWSALVPYYP 227
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju03g2536 227 ProSitePatterns 'Homeobox' domain signature. 89 112 IPR017970 GO:0000981|GO:0006355
Alju03g2536 227 PRINTS Lambda-repressor HTH signature 85 94 IPR000047 GO:0003677
Alju03g2536 227 PRINTS Lambda-repressor HTH signature 94 110 IPR000047 GO:0003677
Alju03g2536 227 SUPERFAMILY Homeodomain-like 49 116 IPR009057 -
Alju03g2536 227 Coils Coil 106 154 - -
Alju03g2536 227 MobiDBLite consensus disorder prediction 159 179 - -
Alju03g2536 227 CDD homeodomain 59 115 IPR001356 GO:0003677
Alju03g2536 227 Pfam Homeobox associated leucine zipper 114 148 IPR003106 GO:0006355|GO:0043565
Alju03g2536 227 ProSiteProfiles 'Homeobox' domain profile. 54 114 IPR001356 GO:0003677
Alju03g2536 227 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN 53 190 IPR045224 GO:0003700
Alju03g2536 227 MobiDBLite consensus disorder prediction 159 197 - -
Alju03g2536 227 FunFam Putative homeobox-leucine zipper protein ATHB-51 56 119 - -
Alju03g2536 227 Pfam Homeodomain 59 112 IPR001356 GO:0003677
Alju03g2536 227 Gene3D - 56 118 - -
Alju03g2536 227 SMART HOX_1 57 118 IPR001356 GO:0003677
Alju03g2536 227 Coils Coil 54 74 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju03g2536 Alju-ChrAlju03 51822239 51823470 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju03g2536 16 144 Homeobox Transcription Factor Family AT5G03790 60.870 6.29e-48 154
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Alju03g2536 Homeodomain 2.7e-17 CL0123
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Alju03g2536 03 51822239 51823470 Alju01g1426 01 11313889 11314736 CCT
Alju03g2536 03 51822239 51823470 Alju03g2536 03 51822239 51823470 ECH