Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju03g2521 ATGGACAATTCCCGTAGATCATTTGATAGGATGGGAAAACTTGGCATGAAAAAACCCCGATTGCACTACGAGCTCGAGTTCGGCACAAATCAAAGTGTTCGACCATTTCCTCAGCGACAAGTGACTTCTGGGGTTAACACGTTGGCTTCGGCTAGGTTTAGAACAAACGACAGAGATCCGGGAAGCAATGATTCGGTTCTCGGTCCTCAGCAACTACTGCACCAGGAGCTTGTAACTCAGTATAAGGCTGCGCTTGCTGAGCTGACTTTTAATTCAAAACCAATAATTACGAACTTGACTATAATTGCTGACGAGAGTGTCTATGCGGCCGAGGCAATTGTTGCGACTGTTTGCTCTAATATTCTTGAGGTGCCTAGTGAGCAAAAACTGCCATCACTCTATCTGCTGGACAGCATAGTTAAGAATATTGGGCGGGAATATATTAAACACTTTGCTACCAGACTACCTGAGGTATTTTGCAAGGCTTACAGACAGGTTGATTCATCTGTCCATTCAAGCATGAGGCATCTTTTTGGAACTTGGAAAAGGGTCTTTCCTCTTCAGACTCTTGAGATGATTGAGAAAGAACTGGGTTTTACTCCGGTAGCCAATGGCTTATCTTCTCCATCCCCATCAACTATGCTCAAGAGTGATTCACAACCACAACGCCCGCCTCATGGTATCCATGTGAATCCCAAGTATTTAGAAAGGCAACGTCTTCAGCAATCCAGTAGGGCCATAGGCACAGCTAATGATATGACTGGAACTATTGCAAGCTCAACTGAGGACACAGATAAGCTGGATAGAGCTATGGTTACATCCCGACCTTGGGCAGATCCCAGACTTAAAATGCGCAACATTAAGCCTGCTAATAGAGATACTTTTGATGATTATCTTCCTGAAAAGAGCATCGGTATATCATATGAAGGCAATGGACAAGGTTCCGCTCTTTCTAGTAAAGTGGGCTTGGGCATCGGACAAACTGGTGGTAGGGCCACTGATTTTGGACGCGACAAAATATGGTATAAATCAGGCAGTGATATTGGAGAGATTTCTGGGCAAAGAAATGGTTCAAGTCTCAAGCATTCTGTTTCAATTCATGAAGCAACAAAGTCATTAAACTTGGATGCACATCCGCCACCAACACAAAGCTTAAGGAGTAGTGTGATATCAAGGAGCTGGAAAAATTCTGAGGAAGAGGAATTCATGTGGGACAATATGGACTCTGGGGTGACTGATAACACTGCATCCAGTGTCTCTAGTAACTTGGGTAAAGATCATTGGACTGCTGATGATGAAGGCTTGGATCCACCGCTATCATGGCAATTGCAGGGGCGGCATTTACTGGATGAGCTGAATTGTAAGCCAGATCCCATGGAAGGCTTTGCATCTACTGCAGGAATGATGGGGCAGCATAAATTTCACACTGTTCAAGCTGACACCCCTTTGCGTGAACGGTCTCCTTCATTGCAAGAAAAAATGTGCCAGCCTCACCATGAGCGAAATTTGACTAAGCAACACCACCGACAGACTCTTAAAACATCTCACTTTTCTGGAGATCTGCAGGGCAAATATATTCAAGATTCTTCAGCCGCCCATTCTTCTAATATTCAGGCTGGCAAGTTGCAAAAATCACAACAAAGGGACTGGCATGGTCCAGCACCTTCATTGACTTATTCTCAACCAAGGCATTGTACTGGAGTTTTGCCAAAGCAGCAGCCTGGCTCTTCTCTTCCTGAAGTTTCTGTGAATACACAGAAGCTAGACCAGTCAAATGTTTCTCTAGCCAGTGAAACTTCTGATCAGTCAACATCAAGTGGTTTGTTAGCTGCAGTTATGAAGAGTGGAATTCTTAATAGTTCGGCTATGAATAATCTACTTTCTACAAGTTTCCTGGATACAAGGGTTCTACCATTACAATCAGGGAATCAGCCTACACAGTTAGGTGGGCCTCAGGGGGAGGCTGTATCTCCATCTTCATTTGGTACTTCATTAGACAACTCATCCCATCTGACGAAAATATCTCAACGAAAGGTTGGACAACTACCTAGGCCATGTGATCCGCCTCCAGCTTGCTCTACTGTGTGTAGTACCTCATCTCAGACCTCAAATCTCATCAATGCCTCAAGTCCATTTTCAAACCTTTTAAGCTCATTAGTTGCAAAGGGTTTGATATGTGCAAAGTCAGAGTCATCAATTAAGGCACCAACTGATATGCTTAGTCGTTTGGAAGATCAAAGCCACAGTATTAGCACAAGTAGCTCTTCACCAGTTGCTTCTTCTTCTGGTTCTCCAGCTGTCCATGTATCATCAATTGGAGATGAGGTAAACCGCTCTGTTTCCTTATCTAAGTCAACCACCACAGAAACAAGAAACCTTATTGGCTTTGAGTTTAAGCCTGATGTAATCCGACAATTCAATCCATCTGTGATCAGTGAACTATGGGATGATCTTCCGCATCATTGCAGCATTTGTGGCCTTAGGCTAAGACATCAAGAACAATTTAATGGACACTTGGTATGGCATGCCATGAGGGGAAAGGAACTAAATGGTCTAATTCAGGCATCAAGAAGATGGTATGTGCAGTCAAGTCAGTGGATTACTGGCAAGGTTGAATATTCAACTGAATCTGAGTCTACCAATTCTGTAGACGCATACTGTGAGAAAGCAGACAAGAGTGAACTGGATACAATGGTTCCATCAGACGAAAATCAATGCTTGTGTGTGTTCTGTGGTGAGCTATTTGAGGATGTTTACTGTCAAGAAAGGGATGAGTGGATGTTCAAGGGGGCTACTTACGTGACCAACACAGACAATGATGTTGAGACGGCCAGTAGAAATGTCATCACTGCTAGGGGTTCCATTGTGCATGCAAAATGTTTATCGGAGACCTCAATAATCAGTGTTCCACAGATGGAGCAGGTTTAA 2928 0.4372 MDNSRRSFDRMGKLGMKKPRLHYELEFGTNQSVRPFPQRQVTSGVNTLASARFRTNDRDPGSNDSVLGPQQLLHQELVTQYKAALAELTFNSKPIITNLTIIADESVYAAEAIVATVCSNILEVPSEQKLPSLYLLDSIVKNIGREYIKHFATRLPEVFCKAYRQVDSSVHSSMRHLFGTWKRVFPLQTLEMIEKELGFTPVANGLSSPSPSTMLKSDSQPQRPPHGIHVNPKYLERQRLQQSSRAIGTANDMTGTIASSTEDTDKLDRAMVTSRPWADPRLKMRNIKPANRDTFDDYLPEKSIGISYEGNGQGSALSSKVGLGIGQTGGRATDFGRDKIWYKSGSDIGEISGQRNGSSLKHSVSIHEATKSLNLDAHPPPTQSLRSSVISRSWKNSEEEEFMWDNMDSGVTDNTASSVSSNLGKDHWTADDEGLDPPLSWQLQGRHLLDELNCKPDPMEGFASTAGMMGQHKFHTVQADTPLRERSPSLQEKMCQPHHERNLTKQHHRQTLKTSHFSGDLQGKYIQDSSAAHSSNIQAGKLQKSQQRDWHGPAPSLTYSQPRHCTGVLPKQQPGSSLPEVSVNTQKLDQSNVSLASETSDQSTSSGLLAAVMKSGILNSSAMNNLLSTSFLDTRVLPLQSGNQPTQLGGPQGEAVSPSSFGTSLDNSSHLTKISQRKVGQLPRPCDPPPACSTVCSTSSQTSNLINASSPFSNLLSSLVAKGLICAKSESSIKAPTDMLSRLEDQSHSISTSSSSPVASSSGSPAVHVSSIGDEVNRSVSLSKSTTTETRNLIGFEFKPDVIRQFNPSVISELWDDLPHHCSICGLRLRHQEQFNGHLVWHAMRGKELNGLIQASRRWYVQSSQWITGKVEYSTESESTNSVDAYCEKADKSELDTMVPSDENQCLCVFCGELFEDVYCQERDEWMFKGATYVTNTDNDVETASRNVITARGSIVHAKCLSETSIISVPQMEQV 975
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju03g2521 975 ProSiteProfiles CID domain profile. 73 201 IPR006569 -
Alju03g2521 975 MobiDBLite consensus disorder prediction 529 583 - -
Alju03g2521 975 MobiDBLite consensus disorder prediction 208 228 - -
Alju03g2521 975 MobiDBLite consensus disorder prediction 744 767 - -
Alju03g2521 975 SMART 558neu5 76 198 IPR006569 -
Alju03g2521 975 CDD CID_Pcf11 78 190 IPR047415 -
Alju03g2521 975 Gene3D - 67 198 IPR008942 -
Alju03g2521 975 SUPERFAMILY ENTH/VHS domain 75 196 IPR008942 -
Alju03g2521 975 MobiDBLite consensus disorder prediction 642 668 - -
Alju03g2521 975 Pfam CID domain 82 189 IPR006569 -
Alju03g2521 975 ProSitePatterns Zinc finger C2H2 type domain signature. 822 842 IPR013087 -
Alju03g2521 975 FunFam polyadenylation and cleavage factor homolog 4 70 198 - -
Alju03g2521 975 PANTHER PRE-MRNA CLEAVAGE COMPLEX II 60 965 IPR045154 GO:0000993|GO:0003729|GO:0006369|GO:0006378|GO:0006379
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju03g2521 Alju-ChrAlju03 51673523 51679885 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju03g2521 748 965 C2H2 Transcription Factor Family AT4G04885 32.273 1.76e-31 130