Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju03g2517 ATGTTTTTAACAAACACGGTCTCCAACCCAGACATCCAACACTTACCGAGCTGTCTTACAACCCAGAACTCGGCACACGGCAGTTCAGCAACAACTGGTCAGCACCTGCACTCTACCTCCCAACTGCTTCATCTTCCTCCCATAAATGGCTTCCTCCAACTGTCAACTGCCGCAACCAATCCATCCAACGTCGATCACAACAACATGTTTGGAAGCAGCAGAAGCAAATCTAATTCCTCCACTGGGCGTCACCCCGTTTACAAGGGAGTGAGGCGCAGGAGCAGCGGCAAATGGGTGTCTGAAATTCGTGAGCCTAAGAAGCCCAACCGGATTTGGTTAGGCACATTCCCTACCCCTGAAATGGCCGCCGTCGCCTACGACGTGGCCGCCCTCGCTCTTAAGGGTCAGCTCGCCGAACTTAACTTCCCCGACTCCGTTTCTTCCTTGCCCGTCCCTGCAACTACCTCCCCCTCTGACATTCAGGTAGCTGCGGCCAGCGCCGCCGCCGCAGTCGGGGCTGCTAAGGATGCTTTGTCGGCGGGCGCTGGGGAGTCATCTTCTTCGGTGTCAATGAAAGACAACGAAGCGGGTGCGGCTGAGGAGTTCGTGGATGAGGATTTGATCTTTGATATGCCAAATGTGCTGCTCAATATGGCAGAAGGAATGATGCTCGCTCCTCCTCCACTGGACTGGGATGCTGTTGCCCCCCCAGATTACATGTCTCAGGATCCATACCTTTGGAACTTCCGTCCTTAA 756 0.545 MFLTNTVSNPDIQHLPSCLTTQNSAHGSSATTGQHLHSTSQLLHLPPINGFLQLSTAATNPSNVDHNNMFGSSRSKSNSSTGRHPVYKGVRRRSSGKWVSEIREPKKPNRIWLGTFPTPEMAAVAYDVAALALKGQLAELNFPDSVSSLPVPATTSPSDIQVAAASAAAAVGAAKDALSAGAGESSSSVSMKDNEAGAAEEFVDEDLIFDMPNVLLNMAEGMMLAPPPLDWDAVAPPDYMSQDPYLWNFRP 251
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju03g2517 251 SMART rav1_2 86 149 IPR001471 GO:0003700|GO:0006355
Alju03g2517 251 MobiDBLite consensus disorder prediction 62 84 - -
Alju03g2517 251 ProSiteProfiles AP2/ERF domain profile. 86 143 IPR001471 GO:0003700|GO:0006355
Alju03g2517 251 MobiDBLite consensus disorder prediction 18 38 - -
Alju03g2517 251 PRINTS Ethylene responsive element binding protein signature 109 125 IPR001471 GO:0003700|GO:0006355
Alju03g2517 251 PRINTS Ethylene responsive element binding protein signature 87 98 IPR001471 GO:0003700|GO:0006355
Alju03g2517 251 Gene3D AP2/ERF domain 86 144 IPR036955 GO:0003700|GO:0006355
Alju03g2517 251 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 1D 73 247 IPR045277 GO:0003700
Alju03g2517 251 FunFam Ethylene-responsive transcription factor 2 85 144 - -
Alju03g2517 251 SUPERFAMILY DNA-binding domain 86 145 IPR016177 GO:0003677
Alju03g2517 251 MobiDBLite consensus disorder prediction 62 92 - -
Alju03g2517 251 CDD AP2 87 145 IPR001471 GO:0003700|GO:0006355
Alju03g2517 251 Pfam AP2 domain 85 135 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju03g2517 Alju-ChrAlju03 51621203 51621958 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju03g2517 74 249 AP2-EREBP Transcription Factor Family AT2G36450 59.358 1.97e-56 177
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Alju03g2517 AP2 3.5e-12 CL0081
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Alju01g1392 01 11005196 11006495 Alju03g2517 03 51621203 51621958 CCT
Alju03g2517 03 51621203 51621958 Alju03g2517 03 51621203 51621958 ECH