Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju03g2510 ATGTCTTATGCTCCCAATGGCGGAAATGCTTCTCTAGTGCCTGACAGGAGAATAATGGCCGACGACGATGAGGACGATTCGGGACAGGAAGCTGGACCCATTCACATGGCGGTGGGGCCAAATGCGCCGGAAGGCGCAAGTCTTCAGACGATTGCTGTAGTGAAGTTGCAGAAGCTAGGTTCAGGGTTTGGTTTTGTGGAGTTCGAGGAAGAGAAGAAATTAGCGGATGACGATAATCCTCAGAGCGGCAAAGCAATGTCGGACTATTATCTTTGCCTACTAGGTTTAGGATTGAAGAAAAATCCGTCCTTAACAGCTGCTCTCTGTCTGTCTGCTCTGTCCATGGACTTGTATCTGAAACAATGGAGAAACCAGGATGAGTCAGTGGCAGAGGAACAACACTCTGCAAAGATGCCAAAACTTGTTCTCGAATCTCAGCAAAAGCCACAATCATCTGCCTCTGCTCTCCCTCTGTTTGTACCCCAACCCAACCCTAAAGTCCGCACCTTGTCAGCACTCGCTGATTCAACCTCAGCTTCTACCAGAGTTCCCCGGATGGAGAGTTATTTCAGCTTCTCTCAGTGGCAGGAGCTTGAGTTGCAGGCTTTGATTTTCAGGTACATGTTAGCCGGCGCTGCTGTGCCTCCTGAGCTTCTTCACCCAATCAAGAAAAGCCTTCTTCAATCTTCTTCCTATTTCCCCCAACACTACCCACACTATGACCCTGCTTTAGCATTGCAATCAGGGTATTGGGGAAGGGTAGCCATGGATCCAGAGCCTGGCCGGTGCCGGAGGACTGATGGCAAAAAGTGGCGGTGCTCGAGGGACGTGGTTGCTGGCCAGAAGTACTGCGAGCGCCACATGCATCGCGGTCGAAATCGTTCAAGAAAGCCTGTGGAACTACCCACACTAAACGCTGCCGGTGGCGGCGGCTCTGGCAGCGGCGGAGGCTCTGTCGTTGCTTCAATATCCATGACTGCGCCGTCTTTGGCAACGGCTTCACTGAGTTCCCATTTCGATTTCCATCTTGATCAAAGTTTCTTTGGCACCAATAATGAAAACAAAAACCAGTTTGGAATCCAAGGTGATGGGATAAGTGGGGATGGCAAATCTGATGGTCATATCCTGCGATGTCATTTTAATGATTGGCCAACATCACTTGAAAAATCTCACATTGCCGAAAACAATTTGTACCTATGCATCGATTTCACCTCAATAGCACATTATGAATTGCTGGTCTTAAACGACAAAACTATTAAATTAAATCTCAAGAAACCAAGTACAGTACCCCGCAAATGTAAGTGGCAATCCCTAAGACGAAACGCAGAAGATGCTCTTACAAAAGCTTTGCAAGTGGCCCCTCAAATGATAAGCCACTTCACCGGTCAATTCCTAATACAAAAGCATGAAGTGCTATACATGATTACTAACTAG 1434 0.4791 MSYAPNGGNASLVPDRRIMADDDEDDSGQEAGPIHMAVGPNAPEGASLQTIAVVKLQKLGSGFGFVEFEEEKKLADDDNPQSGKAMSDYYLCLLGLGLKKNPSLTAALCLSALSMDLYLKQWRNQDESVAEEQHSAKMPKLVLESQQKPQSSASALPLFVPQPNPKVRTLSALADSTSASTRVPRMESYFSFSQWQELELQALIFRYMLAGAAVPPELLHPIKKSLLQSSSYFPQHYPHYDPALALQSGYWGRVAMDPEPGRCRRTDGKKWRCSRDVVAGQKYCERHMHRGRNRSRKPVELPTLNAAGGGGSGSGGGSVVASISMTAPSLATASLSSHFDFHLDQSFFGTNNENKNQFGIQGDGISGDGKSDGHILRCHFNDWPTSLEKSHIAENNLYLCIDFTSIAHYELLVLNDKTIKLNLKKPSTVPRKCKWQSLRRNAEDALTKALQVAPQMISHFTGQFLIQKHEVLYMITN 477
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju03g2510 477 SMART QLQ_2 188 224 IPR014978 GO:0005524|GO:0005634|GO:0006355
Alju03g2510 477 ProSiteProfiles QLQ domain profile. 189 224 IPR014978 GO:0005524|GO:0005634|GO:0006355
Alju03g2510 477 Pfam WRC 258 300 IPR014977 -
Alju03g2510 477 ProSiteProfiles WRC domain profile. 257 301 IPR014977 -
Alju03g2510 477 PANTHER GROWTH-REGULATING FACTOR 5 151 390 IPR031137 GO:0005634|GO:0006351|GO:0032502
Alju03g2510 477 MobiDBLite consensus disorder prediction 1 41 - -
Alju03g2510 477 Pfam QLQ 190 222 IPR014978 GO:0005524|GO:0005634|GO:0006355
Alju03g2510 477 MobiDBLite consensus disorder prediction 288 315 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju03g2510 Alju-ChrAlju03 51562496 51568330 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju03g2510 115 303 GRF Transcription Factor Family AT2G36400 60.302 7.35e-68 221
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRF Alju03g2510 WRC 3.2e-22 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Alju01g1388 01 10948522 10950411 Alju03g2510 03 51562496 51568330 CCT
Alju03g2510 03 51562496 51568330 Alju03g2510 03 51562496 51568330 ECH