Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju03g2451 ATGTCCATAAATCACTACTCGCCTGACATTTCAGAGGCCACACTGTGGTGGACTGAGCAACATCGCTACCACCACCACAACCATCAAGGTTTCCTTATGCAACCCATACAAAACCCCTCTCCGGCTTCGGCCTGGCCTTCCTATCTCTGCCCTCCTCCGCCGCCAACCCGCTTCAACCTCAACCACGACGACGACGAATACGAAGACGACGATAGTATTCAACTCCTACAGACCGGTCACGTGGAAAACGATGGGACCACGTCGCATGGAGGTTCAGGCGGGGAAGACGACAAGGAAGGGATGTTCGAGAAGCCATTGACGCCGAGCGACGTGGGGAAGCTGAACAGGCTGGTGATTCCGAAGCAGCACGCGGAGAAGTACTTCCCGTTGGGCGGGGCGGGTGGGGGGGAGACGGCGGCCGGAGAGAGCAAGGGGTTGTCGCTGAGTTTCGAGGACGAGGAGGGCAAGTGCTGGAGGTTCCGTTACTCGTACTGGAACAGCAGTCAGAGCTACGTGCTGACCAAAGGCTGGAGTCGTTACGTTAAGGACAAGCGTCTCGATGCTGGCGACGTCGTTTTCTTCCAGCGCCACCGCACCGACTCCAACCGCCTCTTCATCAACTGGAGGCGCCGCCGCCACTCTCCCTCCACCGCCGCCCACGTTACCAGAGCCACTACCACAGACGCCAACAACAGCAATATCAATAACAACAATGTTGGTGTGGGTGTGGGGTGGACCAGAAGTTTCTATGCTGCACATCCTTATCCTACGGATCATCATCAACCCTTGCCATACCAACCTGACTGTCTTCATGCAGGCGTAGGGTTGGAAGCAGAGCAGAACAAAACGACGACGTCGCCGCCGGGAAACAACTCCAGCTCAAGGATACTGAGGCTGTTCGGTGTAAACATGGAATGCCAACCCGACGAGTCCGGATCCTCCGGACCTGAATACTCGTACATGTCATCGACGACGTCGTCCCAGCAGGGTACAGTCACCCAGCACCACCACCTCTACGGCCTTTATAATCATCAATCTGCTTCTTGTTATACCAATCACTTGGTACGTCAACAACCGCACTCCTAG 1086 0.5599 MSINHYSPDISEATLWWTEQHRYHHHNHQGFLMQPIQNPSPASAWPSYLCPPPPPTRFNLNHDDDEYEDDDSIQLLQTGHVENDGTTSHGGSGGEDDKEGMFEKPLTPSDVGKLNRLVIPKQHAEKYFPLGGAGGGETAAGESKGLSLSFEDEEGKCWRFRYSYWNSSQSYVLTKGWSRYVKDKRLDAGDVVFFQRHRTDSNRLFINWRRRRHSPSTAAHVTRATTTDANNSNINNNNVGVGVGWTRSFYAAHPYPTDHHQPLPYQPDCLHAGVGLEAEQNKTTTSPPGNNSSSRILRLFGVNMECQPDESGSSGPEYSYMSSTTSSQQGTVTQHHHLYGLYNHQSASCYTNHLVRQQPHS 361
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju03g2451 361 MobiDBLite consensus disorder prediction 78 107 - -
Alju03g2451 361 CDD B3_DNA 101 202 IPR003340 GO:0003677
Alju03g2451 361 PANTHER B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR ABI3 15 318 IPR044800 GO:0003700
Alju03g2451 361 SMART B3_2 102 212 IPR003340 GO:0003677
Alju03g2451 361 MobiDBLite consensus disorder prediction 307 332 - -
Alju03g2451 361 Pfam B3 DNA binding domain 102 211 IPR003340 GO:0003677
Alju03g2451 361 Gene3D - 96 221 IPR015300 -
Alju03g2451 361 SUPERFAMILY DNA-binding pseudobarrel domain 98 211 IPR015300 -
Alju03g2451 361 ProSiteProfiles B3 DNA-binding domain profile. 102 212 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju03g2451 Alju-ChrAlju03 51141740 51143296 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju03g2451 95 310 RAV Transcription Factor Family AT5G06250 52.968 2.14e-69 217
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Alju03g2451 B3 2e-29 CL0405
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Alju01g1316 01 10359086 10360303 Alju03g2451 03 51141740 51143296 CCT
Alju03g2451 03 51141740 51143296 Alju03g2451 03 51141740 51143296 ECH