Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju03g2413 ATGCTGCCCCTATCTCTTCGGAGACCTTCTTCTGACATAATTTGTTCGTCTTCTCTCTCTTTCTCAAAAAGAAAAGTTCATGGATGCTCATCATCAAAGGAGGAGTGTTTGGTTGCATCAACTGATTTGAAAAGAGAAAGCGGTCAAATCGAAAGGAGTTGCCGTGTTTTGATCCTTTCACAGATACATCACATAATACTTACTCATGTGCACTGCTTAAGTTCAGAGATGATCATGAAGCACGTGTGCACTCTAATTTCCATCACACACCAGGATTCTTTTGAGAAGTATCGAAGTGAAGTCACCACCAAATTAGTCTCTCACCCAAAATCGATGGCGACGTACTTTCACGGCAATCCCGAAATCCAACCACCGGATGGCCTCCAAACTCTGGTTCTCATGAACCCCGGCTACATCCACTACCCTGACACCCCGCCGCCTCCGCCGCCGCACCCCAGCAACTTGTTCTTCCTCAACTCCATCGCAGCAGGCAACAACTCCCTTACTCCCCAAAACCTCCACCACGTGCCACCCAATCACACCCAGCAATTCGTCGGCATCCCTCTGCCGACCGTCGCAGCCGCCTCCTCCTCCCAGGACCCCGGCCAGCAACACTCGGTGCACCCTCATCAAGATGGCTCCACCTTGCATGGATTTGTGCCTCGCATGCAGTGCAATCTCTGGAACCCAATCGACCCAAACGCGACGGTTCGTGAGACTCCACGAGCGCAGCAGCAGGGACTGTCGCTGAGCCTGTCCTCCCAGCAAGCTGGAATGGGCTCTTTCCGTGTTGATCGTGGCGTGGCATCGCAGGGCCAAGCGCCTGCTATGTCTGGCGAAGACGTTCCCGGGTCGGGCGGGTCACCGTCTTCAGTTTCCGGGGTGACCAACGTGAACGGTGTTTCGGGGATTCAGAGTGCGCTCCTAAGCTCCAAGTACTTGAAAGCAGCACAGGAACTCCTCGACGAGGCCGCCAATGTTAACAACGGCATCAAGACTGAACTGGGAAAGAAGAGCGGTGGGCCCCATACTAAAGCCACCGGGGAGACATCCGGAACAGCCGCTAGTGCCGACGGCTCTGTCGGCGGAGAAGGAAACGCCAAACGGGCCTCTGAGCTATCTGCTGCGGAGAGACAAGAAATTCAGATGAAGAAGGCTAAGCTAATCAGCATGCTTGACGAGGTGGATCAGAGGTACAGGCAGTATCACCAGCAGATGCAGATAGTTATTTCTTCATTCGAACAAGCTGCGGGAATTGGGGCAGCCAGAACATACACAGCCCTTGCGCTTCAAACAATCTCCAAGCAATTTAGGTGCTTGAAAGATGCAATATCAGCCCAAATTCGAGAAGCAAACAAGAGCTTAGGAGAAGAAGATTGCTTTGGAAGCAAGATGGAAGGTTCGAGGCTCAAGTACGTGGACCATCACCTTCGCCAACAGCGAGCTCTCCAACAGTTGGGAATGATCCAGCACAATGCCTGGAGACCCCAGAGAGGGTTGCCTGAAAGATCTGTTTCTGTTCTTCGTGCTTGGCTCTTTGAACACTTCCTCCACCCTTATCCCAAGGATTCTGACAAGCACATGCTTGCTAAGCAAACAGGCCTCACTAGGAGCCAGGTTTCGAATTGGTTCATAAATGCTCGAGTTCGGCTCTGGAAACCAATGGTGGAAGAAATGTACATGGAGGAGATGAAGGAACAAGGACAGAATGGATCTGAAGATAAATCAAGCAAGAGCGGTGAAGATCCTGCTATTAAAACCGCAGCTCCACGACAGAAAAAAGGCCGTGCCACTGAAACGGACGCCAGAAGTCTCAACTCCAACCAAGACTCGCCTTCAAACCACAACACTCCTACAGTTTCAGTTTCTAAACCATTAATATCATCACCCACTGGGGATAGTGTCAGAAACCAGTTTGGATTCAGCTTCATGGGATCATCAGAGCTACAAGGGGTCACGCAAGGAAGTCCCAAGAAACCAAGAAACCAAGAAATTCTACACTTCCCAACCATGGACGTGAAGCCCAATGAGGCCAATAACGAGCAACTTACAATAAAATTTGGAGAGGAGAGGCAGGGGAGGGATGAATACTCATTCATGGGAACCCAGGCAAACTTCATCGGAGGTTTTGGACAATACCCAATTGGGGAAATTGGAAGGTTTGAGGCAGAGCAGTTTACTCCAAGGTTTTCAGGTAATAATGGGGTTTCCCTGACTCTTGGTCTTCCCCACTGTGACACATTGTCAGGAAGCCATCAAACTTTTCTCCCAAACCAGAACATCCAATTGGGAAGAAGACTGGAGATGGGTGAATCAAATGAGTATGGAGCCATAAATCCTTCCACTACTCACACTTCAGCTGCATTTGAGAACATGAACATGCAGAACCCAAAGAGGTTTGCTGCACAGTTGTTGCCAGACTTTGTCACTTAA 2433 0.5014 MLPLSLRRPSSDIICSSSLSFSKRKVHGCSSSKEECLVASTDLKRESGQIERSCRVLILSQIHHIILTHVHCLSSEMIMKHVCTLISITHQDSFEKYRSEVTTKLVSHPKSMATYFHGNPEIQPPDGLQTLVLMNPGYIHYPDTPPPPPPHPSNLFFLNSIAAGNNSLTPQNLHHVPPNHTQQFVGIPLPTVAAASSSQDPGQQHSVHPHQDGSTLHGFVPRMQCNLWNPIDPNATVRETPRAQQQGLSLSLSSQQAGMGSFRVDRGVASQGQAPAMSGEDVPGSGGSPSSVSGVTNVNGVSGIQSALLSSKYLKAAQELLDEAANVNNGIKTELGKKSGGPHTKATGETSGTAASADGSVGGEGNAKRASELSAAERQEIQMKKAKLISMLDEVDQRYRQYHQQMQIVISSFEQAAGIGAARTYTALALQTISKQFRCLKDAISAQIREANKSLGEEDCFGSKMEGSRLKYVDHHLRQQRALQQLGMIQHNAWRPQRGLPERSVSVLRAWLFEHFLHPYPKDSDKHMLAKQTGLTRSQVSNWFINARVRLWKPMVEEMYMEEMKEQGQNGSEDKSSKSGEDPAIKTAAPRQKKGRATETDARSLNSNQDSPSNHNTPTVSVSKPLISSPTGDSVRNQFGFSFMGSSELQGVTQGSPKKPRNQEILHFPTMDVKPNEANNEQLTIKFGEERQGRDEYSFMGTQANFIGGFGQYPIGEIGRFEAEQFTPRFSGNNGVSLTLGLPHCDTLSGSHQTFLPNQNIQLGRRLEMGESNEYGAINPSTTHTSAAFENMNMQNPKRFAAQLLPDFVT 810
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju03g2413 810 MobiDBLite consensus disorder prediction 564 600 - -
Alju03g2413 810 FunFam BEL1-like homeodomain protein 9 497 559 - -
Alju03g2413 810 Coils Coil 314 334 - -
Alju03g2413 810 SMART prehox3 302 446 IPR006563 -
Alju03g2413 810 SUPERFAMILY Homeodomain-like 495 561 IPR009057 -
Alju03g2413 810 ProSiteProfiles 'Homeobox' domain profile. 491 554 IPR001356 GO:0003677
Alju03g2413 810 MobiDBLite consensus disorder prediction 193 211 - -
Alju03g2413 810 MobiDBLite consensus disorder prediction 193 216 - -
Alju03g2413 810 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 207 579 - -
Alju03g2413 810 Gene3D - 497 575 - -
Alju03g2413 810 Pfam Associated with HOX 308 445 IPR006563 -
Alju03g2413 810 MobiDBLite consensus disorder prediction 239 294 - -
Alju03g2413 810 SMART HOX_1 494 558 IPR001356 GO:0003677
Alju03g2413 810 MobiDBLite consensus disorder prediction 601 634 - -
Alju03g2413 810 CDD homeodomain 494 554 IPR001356 GO:0003677
Alju03g2413 810 MobiDBLite consensus disorder prediction 564 634 - -
Alju03g2413 810 MobiDBLite consensus disorder prediction 239 260 - -
Alju03g2413 810 Pfam Homeobox KN domain 511 550 IPR008422 GO:0003677|GO:0006355
Alju03g2413 810 MobiDBLite consensus disorder prediction 332 374 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju03g2413 Alju-ChrAlju03 50756056 50760760 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju03g2413 112 809 Homeobox Transcription Factor Family AT2G35940 50.000 2.02e-174 516
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-BELL Alju03g2413 POX 3e-49 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Alju01g1281 01 10048707 10050754 Alju03g2413 03 50756056 50760760 CCT
Alju03g2413 03 50756056 50760760 Alju03g2413 03 50756056 50760760 ECH