Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju03g2412 ATGGATCACGAGATTGATATCCCTCCCTTCTTTATCTGCCCCGTCTCATTAGAAATCATGAGGGACCCCGTCACTGTGTCCACCGGTATTACATACGACCGTGAGAGCATCGAGAAATGGCTCTTCTCCACCAACAAGTTCACCTGCCCCGTTACCAAACAGCCCCTACCAGACAACACCGATCTCACCCCCAACCACACCCTTCGCCGGCTGATTCAGGCCTGGTGTACCATGAACGCTTCTCACGGCATCGAAAGAATCCCCACCCCTAAGCCTCCAATCACCAAATCCCAAATTGCCAAGCTCCTCAGAGACGCTTCCCGATCACCTCACTCCCTCACTTCATCTCTCCGGCAACTCAAATCCATCGCTTCCGACAGCGAAACAAACAGACGCTGCATGGAAGCTTCCGGTGCAGTTGAGTTCTTAGCATCTATAATCATGTCCACAGCCTCACCACCCCAAGTGGACCCCAACCAAGACGAGGCCTTAAGCATCCTCCACACCCTCCACGTGTCCGAAGCTACCTTAAAATCTCTCATCGCCTTCAGAAACGGAGACCTCATAGATTCTTTAATCACAGTCATGCAGAAAGGAGTGTACGAGTCACGAGCCTACGCAATTCTTTCACTCAACTCAATGTTCCAAGTTGCTGATTCTACACGCTTGTTCAACATAAGATATGAATTATTTGTTGAATTAGTACAAATCCTCAAAGATCAAATCTCCCAGCAGGCTACAAGTGCGACGCTGCAAACACTGATCCAACTCTGCCCATGGGGAAGAAACAGGCACAGAGCGGTAAAAGTAGGGTGTGTTTGGGCAATAATAGAACTGCTTCTGGATTGTGAGGATAGGAAGGTGTGTGAGATGATGCTGGTGGTGTTGGATATGCTATGTGGGTGTGCCGAGGGAAGAGCGGAGCTGTTGAGGCACGGGGCGGGGATCGCCGTCGTCTCCAAGAAGATTCTGAGGGTTTCCATGATGGCCAACGAGAGGGCGGTGAGGATTCTGCTGTCAATTTCCAAGTACTCGGCGACACCAAGTGTGGTGCAGGAAATGATACAAGTAGGTGTTATGGGGAAGCTTTGTTTGGTGATGCAAACGGAGAGTGGGAACAAGACGAAGGAGAAAGCTAGAGAGATTCTCAAAATGCATGCTCACGCTTTCCACAACTCTCCATGCATGCCCAGCACTCTGGGTTCCTACTTAGCTTGA 1218 0.5016 MDHEIDIPPFFICPVSLEIMRDPVTVSTGITYDRESIEKWLFSTNKFTCPVTKQPLPDNTDLTPNHTLRRLIQAWCTMNASHGIERIPTPKPPITKSQIAKLLRDASRSPHSLTSSLRQLKSIASDSETNRRCMEASGAVEFLASIIMSTASPPQVDPNQDEALSILHTLHVSEATLKSLIAFRNGDLIDSLITVMQKGVYESRAYAILSLNSMFQVADSTRLFNIRYELFVELVQILKDQISQQATSATLQTLIQLCPWGRNRHRAVKVGCVWAIIELLLDCEDRKVCEMMLVVLDMLCGCAEGRAELLRHGAGIAVVSKKILRVSMMANERAVRILLSISKYSATPSVVQEMIQVGVMGKLCLVMQTESGNKTKEKAREILKMHAHAFHNSPCMPSTLGSYLA 405
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju03g2412 405 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1 86 IPR013083 -
Alju03g2412 405 CDD RING-Ubox_PUB 8 60 IPR045210 -
Alju03g2412 405 ProSiteProfiles U-box domain profile. 6 82 IPR003613 GO:0004842|GO:0016567
Alju03g2412 405 SUPERFAMILY RING/U-box 4 83 - -
Alju03g2412 405 FunFam RING-type E3 ubiquitin transferase 1 85 - -
Alju03g2412 405 Pfam U-box domain 7 79 IPR003613 GO:0004842|GO:0016567
Alju03g2412 405 SMART Ubox_2 10 75 IPR003613 GO:0004842|GO:0016567
Alju03g2412 405 Gene3D - 96 397 IPR011989 -
Alju03g2412 405 PANTHER WDSAM1 PROTEIN 3 397 IPR045185 GO:0061630
Alju03g2412 405 SUPERFAMILY ARM repeat 100 391 IPR016024 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju03g2412 Alju-ChrAlju03 50740460 50741677 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju03g2412 1 405 U-box Gene Family AT3G52450 54.587 3.13e-164 466