Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju03g2405 ATGAATGACTTGTTCTCCGGTTCCTTCACTCGCCTCCGCCACGAGCAGGCATCGCCGGACCATCATGTCATCGAGATGGCGTCCACGACGCCAACCGGCGGTGTCAACCTCGACAAGTTCTTCGACAACGTGGAGTCGATCAAGGACGAACTCAAGGAGCTGGATCGCCTTAACCAGAACCTCCAGAGCTCACACGAGCAGAGCAAGACCCTTCACAACGCAAAGGCCGTCAAGGACCTCCGCGCTCGCATGGACGCCGATGTTGCGCTTGCTCTGAAGAAGGTCAAGCTCATCAAGGTCAAGCTGGAGGCTCTGGAGCGATCCAACGCGGCCAACCGTAGCTTGCCGGGTTGCGGGCCTGGATCCTCGTCGGACCGGACCCGCACCTCTGTGGTCAACGGGTTGAAAAAGAAGCTGAAGGACTCCATGGAGGGCTTCAATGACCTCAGGCAGCAGATCTCATCGGAATACCGCGAGACTGTGCAACGCAGGTATTTCACGGTCACCGGTGAGAACCCCGATGAGAAGACCGTCGACCTCTTGATCTCTACAGGTGAGAGTGAGACGTTCCTTCAGAAAGCCATCCAAGAGCAGGGTAGAGGCAGGATTCTGGACACCATAAGTGAAATTCAAGAGAGGCATGATGCCGTGAAAGAGATAGAGAAGAATCTGAAGGAGTTGCATCAAGTGTTCCTTGACATGGCAGTGCTGGTGGAATCTCAAGGGGAGCAATTGGATGACATAGAGAGCCACGTGGCGAGAGCTCAATCGTTTGTGAGGAGTGGAGCCGAGCAGTTGCAGACTGCAAGGAAGCACCAGAAAAACACCAGGAAATGGACCTGTTATGCTATCGTGATTCTCCTAGTAATCATCTTGTTTGTGGTTCTCTTCACTGTTAAACCATGGCAACATAACGGTGGGGGCGGCGGCGGCGGCGGCAATCAGCCAGCTTCACCTCAAACACCTCCTCCGCCTCCTGTAAGATAG 987 0.5461 MNDLFSGSFTRLRHEQASPDHHVIEMASTTPTGGVNLDKFFDNVESIKDELKELDRLNQNLQSSHEQSKTLHNAKAVKDLRARMDADVALALKKVKLIKVKLEALERSNAANRSLPGCGPGSSSDRTRTSVVNGLKKKLKDSMEGFNDLRQQISSEYRETVQRRYFTVTGENPDEKTVDLLISTGESETFLQKAIQEQGRGRILDTISEIQERHDAVKEIEKNLKELHQVFLDMAVLVESQGEQLDDIESHVARAQSFVRSGAEQLQTARKHQKNTRKWTCYAIVILLVIILFVVLFTVKPWQHNGGGGGGGGNQPASPQTPPPPPVR 328
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju03g2405 328 Coils Coil 37 67 - -
Alju03g2405 328 FunFam Syntaxin 132 200 300 - -
Alju03g2405 328 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 207 269 IPR000727 -
Alju03g2405 328 Gene3D - 204 300 - -
Alju03g2405 328 FunFam Qa-SNARE, Sso1/Syntaxin1-type, SYP12A-group 34 164 - -
Alju03g2405 328 Gene3D - 35 167 - -
Alju03g2405 328 CDD SNARE_syntaxin1-like 206 268 - -
Alju03g2405 328 SMART tSNARE_6 202 269 IPR000727 -
Alju03g2405 328 MobiDBLite consensus disorder prediction 306 328 - -
Alju03g2405 328 CDD SynN 37 194 IPR006011 GO:0016020
Alju03g2405 328 Pfam SNARE domain 243 295 IPR000727 -
Alju03g2405 328 ProSitePatterns Syntaxin / epimorphin family signature. 213 252 IPR006012 GO:0005484|GO:0006886|GO:0016020
Alju03g2405 328 SUPERFAMILY t-snare proteins 35 262 IPR010989 GO:0016020|GO:0016192
Alju03g2405 328 SMART SynN_4 32 158 IPR006011 GO:0016020
Alju03g2405 328 PANTHER SYNTAXIN 54 290 IPR045242 -
Alju03g2405 328 Pfam Syntaxin 39 242 IPR006011 GO:0016020
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju03g2405 Alju-ChrAlju03 50696554 50698078 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju03g2405 32 328 SNARE and Associated Proteins AT3G11820 75.987 2.60e-156 438