Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju03g2404 ATGAACGACTTGTTCAGCTCCTCCTTCTCCCGCTCCGACGAAGACAACAACCATCACCATGTCATCCAGATGACGGAGCTGACGGACGGCGACAACCTCGACAAGTTCTTCGAGGAAGTGGATTCTCTCAAGAAGGTGCTCAACGAGCTGGATCGCCTCAACCAATCCCTCCGAACCTCCCATGAACAGAGCAAGACTCTTCACAACGCTAAGGCCATCAAGGACCTTCGATCTCGCATGGACTCCGACGTCTCCCTTGCCCTCAAGAAAGCCAAGCTCATCAAGCTCCGCCTCGAGGCCCTTGACCGCTCCAACCAAGATAACCGCAGCCTACCCGGCTGCGGACCCGGCTCGTCTTCCGACCGGACTCGAACTTCCGTGGTCAACGGCTTGAGAAAGAAGCTCAAAGACTCCATGGACAGCTTCAACAACCTCAGGCAACAAATTTCCACCGAGTACACAGACACCGTACGACGTAGGTACTACACGGTCACCGGCGAGAATCCCGACGACAAAACCATTGACCTCCTCGTCTCTACGGGGGAGAGTGAAAATTTTCTGCAGAAGGCGATTCAGCAGCAAGGAAGAGCGAGCGTGATGGACACGATCCAAGAGATTCAGGAGAGGCATGACGCGGTGAAAGAGATAGAGAAGAATCTGAATGAGCTGCACCAGGTGTTCTTGGACATGGCAGTGCTGGTCCAAACTCAGGGGGAGCAGCTGGATGATATAGAGAGCCACGTGGCAAGAGCTAATTCGTATGTGAGGGGTGGGGTGCAGCAGTTGCATGTTGCGAGGAAGCACCAGAAGAATAGCCGCAAATGGACTTGCATTGCCATCATACTGCTCCTCATTGTTATATTGGTTATAGTTCTGCCCATTGTGTTGAGAAAGTGA 897 0.5307 MNDLFSSSFSRSDEDNNHHHVIQMTELTDGDNLDKFFEEVDSLKKVLNELDRLNQSLRTSHEQSKTLHNAKAIKDLRSRMDSDVSLALKKAKLIKLRLEALDRSNQDNRSLPGCGPGSSSDRTRTSVVNGLRKKLKDSMDSFNNLRQQISTEYTDTVRRRYYTVTGENPDDKTIDLLVSTGESENFLQKAIQQQGRASVMDTIQEIQERHDAVKEIEKNLNELHQVFLDMAVLVQTQGEQLDDIESHVARANSYVRGGVQQLHVARKHQKNSRKWTCIAIILLLIVILVIVLPIVLRK 298
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju03g2404 298 Coils Coil 33 63 - -
Alju03g2404 298 MobiDBLite consensus disorder prediction 105 126 - -
Alju03g2404 298 Gene3D - 30 163 - -
Alju03g2404 298 ProSitePatterns Syntaxin / epimorphin family signature. 209 248 IPR006012 GO:0005484|GO:0006886|GO:0016020
Alju03g2404 298 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 203 265 IPR000727 -
Alju03g2404 298 Coils Coil 128 148 - -
Alju03g2404 298 SUPERFAMILY t-snare proteins 32 258 IPR010989 GO:0016020|GO:0016192
Alju03g2404 298 SMART tSNARE_6 198 265 IPR000727 -
Alju03g2404 298 Coils Coil 203 223 - -
Alju03g2404 298 Pfam Syntaxin 35 238 IPR006011 GO:0016020
Alju03g2404 298 Pfam SNARE domain 239 291 IPR000727 -
Alju03g2404 298 CDD SynN 33 190 IPR006011 GO:0016020
Alju03g2404 298 CDD SNARE_syntaxin1-like 202 262 - -
Alju03g2404 298 Gene3D - 191 296 - -
Alju03g2404 298 SMART SynN_4 28 154 IPR006011 GO:0016020
Alju03g2404 298 PANTHER SYNTAXIN 43 287 IPR045242 -
Alju03g2404 298 FunFam Syntaxin 132 196 296 - -
Alju03g2404 298 FunFam Qa-SNARE, Sso1/Syntaxin1-type, SYP12A-group 30 160 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju03g2404 Alju-ChrAlju03 50693137 50694482 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju03g2404 28 277 SNARE and Associated Proteins AT3G11820 75.600 3.87e-142 401