Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju03g2384 ATGGAAACGCGTTTCCGAAATCACCTTCACTTTCCTTTAGGTTTCGGCACCCCAGCAACGACCTCAACTTCCACAATGCTTAGTAGCTTCAAGGGCTTCTTGACCCGTATGAGAAGGATCAAGAAAAAGAACAGAAACAAGCGCAAACTCAAAAGCCAATTCGCTTTCCATAAGCAAAAATGCATTTCCCGTAACAATGAATTGCTAGACCGAGATGAAGTGAAGGACGATACTGATGGTTTCCGGCTCAAAACCTATGCTTCGTCACACACTTATTGGGTTCAACCTTTGGGCAATCTTTATCTCAACACAGGTCCTATCAACTGCAGAGATACAGGTTTAGGTAATCTGCACACTCTGACAGATGAGCTTGTTCTTGAAATTCTGGGGTTGTTGAGTGGGAACGACTTGGGGGTTTTAGCAACAGTGAGCAAGTGTTTTTATGTTTTCACTAATCATGAACCCATTTGGAGGAATCTTGTATTGGAAAATCTTAGTGGTGGCTTTCGGTACAATGGCTGTTGGAAATCTACTTATATTGGTGCTTGCTACCCTTCATATGTATCAAACACTACCGTTCTGAATTTGAAAGTGAGAGACTTTTATTCTGATTATCTTTTTCAAAGTTGGCTCTGTGCTAATCTTGAAATGAAACCAGAATGGCTGGTAAGAGATAATATAGTTCGGAAAAGAGGCATTTCGGTTGAAGAATTCGTCAAGAATTTTGAGGAGCCTAATAAGCCGGTATTGTTGGAAGGATGTCTTGATAATTGGGATGCTCTGAAGAAATGGGATAGAGATTATTTGGTGCAGTTGTGTGGTGATGTTAAGTTTTCAGTTGGTCCGGTAGAGATGAGGCTTGAAGACTATTTTCAGTATTCAGATCAAGCGAGAGAAGAAAGACCATTGTACCTGTTTGATCCAAAGTTTGCTGAAAAGGTTCCAAATTTGGATTCCCAGTTTGACGTTCCGGCTTACTTCCAGGAGGACTTGTTTAGTGTCTTGGGCAAAGAGAGACCAGACCACAGGTGGATTATTGTTGGGCCAGCTGGATCAGGATCATCTTTCCATGTTGATCCAAATTCGACTTCGGCTTGGAATGCTGTAATCAAGGGCTCTAAGAAGTGGATATTATTTCCTCCTGATGTGATTCCACCTGGAGTTCATCCTAGCCCTGATGGTGCAGAGGTTGCATCTCCTGTTTCAATAATTGAGTGGTTTATGAACTTTTACGGTGCGACAAAAAGTTGGAAGAAAAAACCTATTGAATGCATCTGTAAAGCTGGGGAGGTCGTTTTTGTGCCTAATGGATGGTGGCATTTGGTGATCAACTTGGAGGAGTCCATAGCAATAACCCAAAATTATGTCAGTAGGAGAAACTTGGTTAATGTCTTGGATTTTCTTAAAAAGCCGAATGCGAGCGTGCTAGTTTCTGGAACAAGAGATCGAGTGAATTTGTATGATAAGTTTAGAAACGCTATAGAGGATTCTTTTCCTGGAATAATTGATGAGCTGACCCGGAAAGAGGAAGAGAAACAGGTTCAGCAGAAGAAACTTTCCTTCTGGGATTCTGTCACAGATTCTAAAGTGGGAGCTTTTAAGTTCTCTTTCTAG 1614 0.4145 METRFRNHLHFPLGFGTPATTSTSTMLSSFKGFLTRMRRIKKKNRNKRKLKSQFAFHKQKCISRNNELLDRDEVKDDTDGFRLKTYASSHTYWVQPLGNLYLNTGPINCRDTGLGNLHTLTDELVLEILGLLSGNDLGVLATVSKCFYVFTNHEPIWRNLVLENLSGGFRYNGCWKSTYIGACYPSYVSNTTVLNLKVRDFYSDYLFQSWLCANLEMKPEWLVRDNIVRKRGISVEEFVKNFEEPNKPVLLEGCLDNWDALKKWDRDYLVQLCGDVKFSVGPVEMRLEDYFQYSDQAREERPLYLFDPKFAEKVPNLDSQFDVPAYFQEDLFSVLGKERPDHRWIIVGPAGSGSSFHVDPNSTSAWNAVIKGSKKWILFPPDVIPPGVHPSPDGAEVASPVSIIEWFMNFYGATKSWKKKPIECICKAGEVVFVPNGWWHLVINLEESIAITQNYVSRRNLVNVLDFLKKPNASVLVSGTRDRVNLYDKFRNAIEDSFPGIIDELTRKEEEKQVQQKKLSFWDSVTDSKVGAFKFSF 537
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju03g2384 537 SUPERFAMILY F-box domain 113 180 IPR036047 GO:0005515
Alju03g2384 537 Gene3D - 112 185 - -
Alju03g2384 537 PANTHER ARGININE DEMETHYLASE AND LYSYL-HYDROXYLASE JMJD 114 535 - -
Alju03g2384 537 SMART cupin_9 310 472 IPR003347 -
Alju03g2384 537 Gene3D Cupin 206 457 - -
Alju03g2384 537 ProSiteProfiles JmjC domain profile. 312 472 IPR003347 -
Alju03g2384 537 Coils Coil 40 60 - -
Alju03g2384 537 FunFam F-box protein At1g78280 207 457 - -
Alju03g2384 537 SUPERFAMILY Clavaminate synthase-like 227 469 - -
Alju03g2384 537 Pfam Cupin-like domain 236 455 IPR041667 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju03g2384 Alju-ChrAlju03 50562649 50565028 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju03g2384 110 461 Glycosyltransferase AT1G78280 38.227 2.77e-76 257
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Jumonji Alju03g2384 Cupin_8 4.2e-26 CL0029