Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju03g2374 ATGACAACCGATCAGCATAAATTTTGGGTTTTGTATTACGTCTGTTGTTCCCCGTTGTTCTCCATCCCACCGTGTTCATTCCCAAACCTTACCCCTTATCCTTTTGAAACTGGTGTTTGTGTGAACAGGATGGAGTCTCAGGTGAAGCATGCTGTGGTTGTTAAAGTCATGGGACGCACTGGATCCAGAGGGCAAGTGACTCAAGTTAGAGTCAAGTTTTTGGATGATCATAACCGTTATATCATGAGGAATGTGAAAGGACCCGTGAGAGAAGGAGACATTCTTACCTTGCTGGAGTCTGAAAGGGAAGCTAGAAGACTTCGCTAG 327 0.4495 MTTDQHKFWVLYYVCCSPLFSIPPCSFPNLTPYPFETGVCVNRMESQVKHAVVVKVMGRTGSRGQVTQVRVKFLDDHNRYIMRNVKGPVREGDILTLLESEREARRLR 108
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju03g2374 108 SUPERFAMILY Nucleic acid-binding proteins 44 108 IPR012340 -
Alju03g2374 108 CDD S1_S28E 49 108 IPR000289 GO:0003735|GO:0005840|GO:0006412
Alju03g2374 108 Gene3D - 41 108 IPR012340 -
Alju03g2374 108 PANTHER 40S RIBOSOMAL PROTEIN S28 44 108 IPR000289 GO:0003735|GO:0005840|GO:0006412
Alju03g2374 108 Hamap 30S ribosomal protein S28e [rps28e]. 44 108 IPR000289 GO:0003735|GO:0005840|GO:0006412
Alju03g2374 108 FunFam 40S ribosomal protein S28 41 108 - -
Alju03g2374 108 Pfam Ribosomal protein S28e 47 107 IPR000289 GO:0003735|GO:0005840|GO:0006412
Alju03g2374 108 ProSitePatterns Ribosomal protein S28e signature. 99 107 IPR028626 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju03g2374 Alju-ChrAlju03 50475712 50476576 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju03g2374 44 108 Cytoplasmic Ribosomal Protein Gene Family AT5G03850 90.769 1.24e-36 117
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Alju03g2374 03 50475712 50476576 Alju03g2374 03 50475712 50476576 ECH