Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju03g2341 ATGGAGCTGGCTCTGAGCTTGGGAGACGGCCCTAAGGGTTTTCCTATACTGGACAAGGCCCCAAGAATGGCTAACAAGGAACCCGGTTTCTGCATATCTCTTGGTCAGAGTCTCGCCGAGAAAGTTTCAGAGCATGATAGTGTCCAAGATGAGACCAGAGCCTCTTCAGATCCGCCTCTTCAGCTTGACCTTCTTCCTTACACGCCCATTCCTCGACCCCACCCACCTTCTTATCTTCGGATTCCTTGGCTCTCTGATTCTTTGGGATCTCAACGTTTCTCGCCGGATGGGGGAGCGAAGGCGTTGGACGTCAACCGTTTGCCGGCGGCAGGAGCGGAGGAGGCAGACGGCGGTACTCCACCTTCCTCGTCTCCTAATAGTGTATCGTCATTTCACATGGACTTTTACATGAGTGGTAACACGGGCAGTAAAAGCAAGAGAGAGCTTGATGGCGATGGTGAGAGAACTAATTCCCGGGCCAGTGACGATGACGAGAACGGGTCGACCCGTAAGAAACTCAGACTCTCCAAGGAACAATCAGCTTTTCTTGAAGAAAGTTTCAAAGAACATTCTACTCTTAATCCTAAGCAGAAACTGGTTCTGGCTAAACAGTTAAATCTTCGCCCTCGCCAAGTAGAAGTTTGGTTTCAAAACAGAAGGGCAAGGACAAAGTTGAAGCAGACGGAAGTAGATTGTGAGTATCTGAAGAGATGTTGTGAGACGCTGACGGAAGAGAATAAGAGGTTGCAGAAGGAGCTGCAGGAACTAAGGGCATTAAAGACGTCACAGCCATTTTACATGCAGCTTCCAGCTACCACCCTAACAATGTGTCCCTCATGTGAACGGGTGGCCACCAACTCGTCGTCTTCTACCTCCGCCGTCACTATCCCCAACAATGCTTCGCAGGCGGCGGCGTCGCCACTCATGTCTCTCACCAACCCCAGAACAGTCTCTCCCTTTGATCATGATCATAATGTCCAGCCTCATCGCACTCCTTCCTCATGA 1005 0.5065 MELALSLGDGPKGFPILDKAPRMANKEPGFCISLGQSLAEKVSEHDSVQDETRASSDPPLQLDLLPYTPIPRPHPPSYLRIPWLSDSLGSQRFSPDGGAKALDVNRLPAAGAEEADGGTPPSSSPNSVSSFHMDFYMSGNTGSKSKRELDGDGERTNSRASDDDENGSTRKKLRLSKEQSAFLEESFKEHSTLNPKQKLVLAKQLNLRPRQVEVWFQNRRARTKLKQTEVDCEYLKRCCETLTEENKRLQKELQELRALKTSQPFYMQLPATTLTMCPSCERVATNSSSSTSAVTIPNNASQAAASPLMSLTNPRTVSPFDHDHNVQPHRTPSS 334
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju03g2341 334 ProSitePatterns 'Homeobox' domain signature. 201 224 IPR017970 GO:0000981|GO:0006355
Alju03g2341 334 MobiDBLite consensus disorder prediction 111 175 - -
Alju03g2341 334 MobiDBLite consensus disorder prediction 42 69 - -
Alju03g2341 334 CDD homeodomain 170 227 IPR001356 GO:0003677
Alju03g2341 334 SMART halz 226 269 IPR003106 GO:0006355|GO:0043565
Alju03g2341 334 MobiDBLite consensus disorder prediction 119 144 - -
Alju03g2341 334 MobiDBLite consensus disorder prediction 311 334 - -
Alju03g2341 334 FunFam Homeobox-leucine zipper protein 18 155 231 - -
Alju03g2341 334 Coils Coil 232 262 - -
Alju03g2341 334 Pfam Homeodomain 170 224 IPR001356 GO:0003677
Alju03g2341 334 SUPERFAMILY Homeodomain-like 160 227 IPR009057 -
Alju03g2341 334 CDD bZIP 219 258 - -
Alju03g2341 334 Gene3D - 174 224 - -
Alju03g2341 334 ProSiteProfiles 'Homeobox' domain profile. 166 226 IPR001356 GO:0003677
Alju03g2341 334 Pfam Homeobox associated leucine zipper 226 260 IPR003106 GO:0006355|GO:0043565
Alju03g2341 334 MobiDBLite consensus disorder prediction 145 175 - -
Alju03g2341 334 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN HAT14 38 300 - -
Alju03g2341 334 SMART HOX_1 168 230 IPR001356 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju03g2341 Alju-ChrAlju03 50204288 50205587 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju03g2341 59 290 Homeobox Transcription Factor Family AT5G47370 54.217 9.33e-71 220
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Alju03g2341 Homeodomain 3.8e-15 CL0123
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Alju01g1199 01 9322427 9323748 Alju03g2341 03 50204288 50205587 CCT
Alju03g2341 03 50204288 50205587 Alju03g2341 03 50204288 50205587 ECH