Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Alju03g2338 | ATGGGGGAACAGACATCTGACGCGATGAACCTTGATTTGAATTTGGATCCCATCCCGGAGCCACCAGCCGACTCCATGGCCGGCGAACATGCGGTCTCACTAGATGATTGGACCCAGCGACCTCTTCACCGAATTAATGAAGGTCGTCGGTATAGGTCTCGGCTACACTGGAGATCACGGCATCCTCCTGTCTCACCCGATGCCCAGCGACATGATAGTCCAACGCTCGAATTCCAAAATTTTCCGATGGAATTAAATCAATTTGTGGAGACCCCTGGCATTGAGACTGCCCTACAGGTTGGTCAGGACGGTTTTGAGGCTGACCTAAGATCAGAGGAGGTACCAAAAGCATGTGAAAATAACAACAGCTTAACGATGGGCGAGGAGTTAGAGAAGAAGGATGATGTTGAAAAGGGTATTGGCGATGATGGGGGTTTCTTCGATTGTAATATCTGTTTGGACCTTGCCAAGGATCCTGTTGTGACTTGTTGTGGTCATTTGTTTTGTTGGCCTTGCCTCTATCGATGGCTACATATGCACTCAGATGCCAAGGAATGTCCTGTTTGTAAGGGCGAGGTGTCCTACAAAAATATCACCCCAATATATGGTCGTGGAAACAACAATGTTCAAGACCCTGAGGAGGATCCTACTCTCAAAGTCCCTCTTAGGCCACACGCAAGGCGGGTTGAGGGTTTAAGACCAACCTCTCAGAGAAGTGCATTTGGAAATTCCATGGAGGAGATGATTAGGCGTCTCGGTGGAAGAGTTGATCTTACTCGCGGTGTGGTTCGCCCGCAGGACCCTGCTGAAACCGTGCGTGAAGCAGCAGAGAGAACAAGGTTATTGCTAAACAGGTTTTTGACTTCTCGAGCAATTCGGAGAGAGCAAAATGTTGAAGCATCCCCCGATGATGCAGGATATTTAACGGCAAACAATATGAGTAATCTTGACGCAGGGGATAATCACAGGCTGCAATCGCTTCTGCTTCGAAGAACACAGTCCCACAGAGCAACACTTTCGTCATTTTCCTCAGCTTTAAGCTCGGCGGAGCGAGTGGTAGAGACATATTTCCGGACCCGGGCAGGAGCTAGAAACCAAGAACAAGCTTCACAGGTGGATGACAGAGATTCATATTCAAGCATTGCTGCTGTTATAAATTCAGAGAGTCAAGTGGACACTGCCGTAGAAATTGATTCCATGGTGTCATTGTCCACTTCCTCTTCCAGAAGGAGAAACGATTCTTCTAGAGTTTCTGATGTAGATACTGGAGACTCTGGTGCTCCCAGGCCTAGGCGAAGACGTTTACATTGA | 1311 | 0.4813 | MGEQTSDAMNLDLNLDPIPEPPADSMAGEHAVSLDDWTQRPLHRINEGRRYRSRLHWRSRHPPVSPDAQRHDSPTLEFQNFPMELNQFVETPGIETALQVGQDGFEADLRSEEVPKACENNNSLTMGEELEKKDDVEKGIGDDGGFFDCNICLDLAKDPVVTCCGHLFCWPCLYRWLHMHSDAKECPVCKGEVSYKNITPIYGRGNNNVQDPEEDPTLKVPLRPHARRVEGLRPTSQRSAFGNSMEEMIRRLGGRVDLTRGVVRPQDPAETVREAAERTRLLLNRFLTSRAIRREQNVEASPDDAGYLTANNMSNLDAGDNHRLQSLLLRRTQSHRATLSSFSSALSSAERVVETYFRTRAGARNQEQASQVDDRDSYSSIAAVINSESQVDTAVEIDSMVSLSTSSSRRRNDSSRVSDVDTGDSGAPRPRRRRLH | 436 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Alju03g2338 | 436 | MobiDBLite | consensus disorder prediction | 402 | 436 | - | - | |
| Alju03g2338 | 436 | SMART | ring_2 | 149 | 189 | IPR001841 | - | |
| Alju03g2338 | 436 | Pfam | Zinc finger, C3HC4 type (RING finger) | 149 | 189 | - | - | |
| Alju03g2338 | 436 | SUPERFAMILY | RING/U-box | 144 | 202 | - | - | |
| Alju03g2338 | 436 | ProSiteProfiles | Zinc finger RING-type profile. | 149 | 190 | IPR001841 | - | |
| Alju03g2338 | 436 | FunFam | Zinc finger family protein | 130 | 203 | - | - | |
| Alju03g2338 | 436 | MobiDBLite | consensus disorder prediction | 1 | 32 | - | - | |
| Alju03g2338 | 436 | ProSitePatterns | Zinc finger RING-type signature. | 164 | 173 | IPR017907 | - | |
| Alju03g2338 | 436 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 130 | 203 | IPR013083 | - | |
| Alju03g2338 | 436 | PANTHER | E3 UBIQUITIN-PROTEIN LIGASE RNF5-RELATED | 120 | 331 | IPR045103 | GO:0005783|GO:0006511|GO:0061630 | |
| Alju03g2338 | 436 | CDD | RING-HC_AtRMA-like | 147 | 190 | - | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Alju03g2338 | Alju-ChrAlju03 | 50188044 | 50189354 | Dispersed/Wgd |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Alju03g2338 | 1 | 425 | C3H Transcription Factor Family | AT3G58030 | 50.562 | 1.09e-119 | 354 |