Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju03g2325 ATGGATGCCCGCAAGAGAGGAAGGGTTGAAGCTGGGCCCAATGTTAATGGCGGTTCCAAAAAGTTCAAGCAAGAAATGGACTCCTTATCATCTGCTGTAGGAAGCAAATCGAAGCCATGTACCAAGTTTTTCAGCACCGCTGGCTGCCCGTTTGGTGAGAGCTGCCACTTCTTGCACTATGTTCCTGGTGGTTACAATGCTGTTGCTCAGATGATGAGGTTAACACCAGCTGTGCCTCCAGCATCTAGAAATATTGTTGCCCCACCACCTGTCCATAATGGGGCTGCACCGCCGACTGTTAAATCCCGCATATGCAACAAATATAACACTGCTGAAGGCTGTAAGTTTGGTGACAAGTGTCACTTTGCCCATGGTGAATGGGAACTTGGTAAGCCTATTGCTCCATCAGTGGATGATCATCGTGGCATGGGACCTATTTCCGGCCGTTCAGCTGGTCGAGTGGAGCCTCCTCCAGGTCCTGTTTCTAGTTTTGGTGCCAATGCTACTGCTAAGATCAGTGTTGAAGCTTCATTAGCTGGAGCTATCATAGGAAAGGGAGGTGTGAACTCCAAGCAGATCTGCCGCCAAACAGGAGCCAAACTCTCAATTCGGGATCATGAGTCAGATCCAAATCTTAGGAACATCGAGCTTGAAGGTAGTTTTCAGCAAATTCAGAATGCGAGCAACATGGTAAAAGAGTTACTGGTGACATTATCGATGTCAGCGCCGTCTAAAACCCATGGCGGGGTTGCGGGAGCACTAGGCTCTCAAGGAAGTAACTTTAAGACAAAGCTGTGTGAGAACTTTGCCAAGGGGTCTTGCACCTTTGGAGAAAGATGTCACTTCGCGCATGGAGCTGCTGAATTACGTAAAGCATGA 879 0.4846 MDARKRGRVEAGPNVNGGSKKFKQEMDSLSSAVGSKSKPCTKFFSTAGCPFGESCHFLHYVPGGYNAVAQMMRLTPAVPPASRNIVAPPPVHNGAAPPTVKSRICNKYNTAEGCKFGDKCHFAHGEWELGKPIAPSVDDHRGMGPISGRSAGRVEPPPGPVSSFGANATAKISVEASLAGAIIGKGGVNSKQICRQTGAKLSIRDHESDPNLRNIELEGSFQQIQNASNMVKELLVTLSMSAPSKTHGGVAGALGSQGSNFKTKLCENFAKGSCTFGERCHFAHGAAELRKA 292
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju03g2325 292 FunFam Zinc finger CCCH domain-containing protein 94 131 - -
Alju03g2325 292 FunFam Zinc finger CCCH domain-containing protein 255 291 - -
Alju03g2325 292 SMART kh_6 166 236 IPR004087 GO:0003676
Alju03g2325 292 SUPERFAMILY CCCH zinc finger 260 290 IPR036855 GO:0046872
Alju03g2325 292 ProSiteProfiles Zinc finger C3H1-type profile. 99 127 IPR000571 GO:0046872
Alju03g2325 292 SMART c3hfinal6 101 126 IPR000571 GO:0046872
Alju03g2325 292 SMART c3hfinal6 34 61 IPR000571 GO:0046872
Alju03g2325 292 SMART c3hfinal6 260 286 IPR000571 GO:0046872
Alju03g2325 292 Pfam KH domain 170 233 IPR004088 GO:0003723
Alju03g2325 292 PANTHER CCCH ZINC FINGER/TIS11-RELATED 23 148 IPR045877 GO:0003729
Alju03g2325 292 ProSiteProfiles Zinc finger C3H1-type profile. 34 62 IPR000571 GO:0046872
Alju03g2325 292 ProSiteProfiles Type-1 KH domain profile. 167 231 - -
Alju03g2325 292 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 261 285 IPR000571 GO:0046872
Alju03g2325 292 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 101 126 IPR000571 GO:0046872
Alju03g2325 292 ProSiteProfiles Zinc finger C3H1-type profile. 260 287 IPR000571 GO:0046872
Alju03g2325 292 Gene3D K Homology domain, type 1 164 258 IPR036612 GO:0003723
Alju03g2325 292 CDD KH-I_AtC3H36_like 170 235 - -
Alju03g2325 292 SUPERFAMILY CCCH zinc finger 35 60 IPR036855 GO:0046872
Alju03g2325 292 Gene3D - 95 131 - -
Alju03g2325 292 Gene3D - 259 292 - -
Alju03g2325 292 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 156 237 IPR036612 GO:0003723
Alju03g2325 292 MobiDBLite consensus disorder prediction 1 23 - -
Alju03g2325 292 Pfam RNA-binding, Nab2-type zinc finger 39 59 - -
Alju03g2325 292 SUPERFAMILY CCCH zinc finger 98 130 IPR036855 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju03g2325 Alju-ChrAlju03 50097314 50100041 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Alju03g2325 KH_1 3.4e-12 CL0007
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Alju01g1185 01 9203218 9209947 Alju03g2325 03 50097314 50100041 CCT