Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju03g2324 ATGGCGTCTAAAGGTCCGAGGTCTAAGATTGATCACGAGAGTAGAGCAAAGCGGCAAAAGGCACTTGAGGCTCCAAGGGAGCCTCGACGTCCTAAAACTCACTGGGATCATGTCATAGAAGAGATGGTGTGGTTATCAAAGGATTTTGAGTCAGAGAGGAAATGGAAATTAGCTCAGGCAAAGAAAGTTGCTTTAAGAGCTAGCAAGGGCATGTTAGATCCGGCTACAAGAGGTGAAAAGAAGATGAAGGAAGAAGAGCAGCGATTAAGGAAAGTTGCACTAAATATTTCAAAGGATGTTAAGAAATTTTGGATGAAAATAGAGAAGCTGGTTCTTTACAAGCATCAGATGGAGCTTGATGAGAAAAAGAAAAAGGCACTTGACAAACAGCTTGAGTTTCTTTTGGGTCAAACTGAAAGGTACTCAACCATGTTGGCAGAAAATCTTGTGGATTCTATTAAACCAGTTGAGAAACAGTCACCAGAACAGCATAGGAGTGCCCAATACAAAGGGGAGGATGAAGACGTTATCAGCAGATCTAATGAAGCTAATGCTGAGTTTCAGTCGGATCCTAGTGACAATGATGAAGAATACGATGTGCAATCTGATGAATCGGAGGATGATGAGCAAACCCTTGAGGAAGATGAGGCTCTCATAACTGAAGAAGAAAGGCAAGAGGAGTTGGCGGCTTTGCGTGATGAAGTTGATCTTCCTCTTGAGGAGTTACTGAAGCGTTATTCTGGGGAGAAAGCAGGACCAGCTACTCATGAAAGTAGTCCAGAGCACAGCAATGATGATGATACAGAAGTCAGAGCTGGTAATGGAAATGAAAATGGAGATGGTATTTTATCTATTAGCAAGCTTGGCTCAAGCAGCTCCAGCAAGATCTCTGGTCGTCGTTGTGCTGAAAGTAATGGTGGTCTAACTACACCAGCAGAGAACATAGCCAAAGATAAGACCTGTCAATCTGAAAATCTTGCATATGACTTTAGTGATGAAGAGGAAGATGGTGACTTCTTGCTTGCCACAGAAGATAATGATGATGAAACAACCTTATCCGAGGAGGAAAAAATGGAAAAAATGGACGCAATTGCTCCAAAGGATGAGATTGCTTTATTACAAAGGGAGAGTGACATGCCTGTTGAGGAACTCCTTGCAATGTATAGAAAGTATTCCAGTGGCAAACATAGGGAAGATGAATCTGAAGATGCTGCTTCTTTGTCGGAAGATCTTTTGGATTCTCCACTGCAAGATGATAGGAAGAAGGATCCTTCGGTTTCTGTGGATGAAGATGTCAAGCCTGTCGAGCACATGGCTATTGTACAGTCCCAGACAGAAGAACAACATTGGGAAGCGCCTCATGAAAATCCTGAGGGAAGGGATAGTGAAAATCTGATAGCAGATGCAGCAGCTGCTGCAAGATCAGCGCAACCAACTGGAAATACCTTCTCCACAACTAAAGTGCGCACAAAGTTCCCTTTTCTCCTCAAGTATCCTCTCCGTGAGTATCAACACATTGGATTAGATTGGCTTGTAACAATGTATGAGAAAAGGCTGAATGGGATTTTGGCAGATGAAATGGGACTTGGTAAAACAATTATGACTATAGCTTTGCTTGCACATCTTGCTTGTGAAAGAGGGATTTGGGGCCCACATCTCATCGTGGTACCAACTAGTGTCCTGCTTAACTGGGAGACTGAATTTCTCAAATGGTGTCCTGCTTTTAAAATTTTGACTTATTTTGGAAGTGCAAAAGAGAGGAAGCTTAAAAGACAAGGATGGTTGAAACCAAACTCATTTCATGTATGCATAACGACTTATCGATTAATTATTCAGGATTCTAAAGTCTTTAAGCGAAAGAAGTGGAAATACTTGATCTTAGATGAAGCTCACCTCATTAAAAATTGGAAGTCACAAAGATGGCAAACCCTCTTGAATTTCAATTCAAAGCGACGTATTCTCTTGACTGGTACACCACTACAGAATGATCTTATGGAACTTTGGTCTCTCATGCATTTCTTGATGCCTCATGTTTTCCAGTCTCATCAGGAGTTTAAGGATTGGTTCAGTAATCCTATATCTGGGATGGTAGAGGGGGAGGAAAAAGTAAATAAGGAGGTTGTTGATCGCTTGCACAATGTCCTTCGTCCATTCATACTCCGTCGCTTAAAACAAGATGTGGAGAAACAGCTTCCAATGAAGCATGAGCATGTCATATATTGTAGATTGTCAAAAAGGCAGCGGAATTTGTATGAAGACTTCATTGCTAGTACTGAGACCCAAGCCACTCTTGCGAGTGCCAATTTTTTTGGGATGATTAGTATCATAATGCAACTCCGTAAGGTTTGCAACCACCCTGACCTATTTGAAGGCCGTCCTATTATCAGTTCTTTTGATATGTGGGGCATTGATGTTCAGCTAAGTTCTTCTGTGTGTTCAGTGTTCTCAACCAAACCCTTTTCGTCAGTAGACCTAAAAGGTTTTGGATTTTTATTTACTCATCTTGATTATAGCATGACTTCATGGGAGAGTGATGAAGTAAAAGCTATTGAGACCCCTGCAAGTTTAATCATGGAGCGTGCTGATATGAATGGCCTACAAGTAATTAGGCCTAAATCAAAGGATCAGAAGAGTTTTCAAGGAACTAACATTTTTGAGGAAATTCAGAGGGCAATTTGGGAAGAGAGGCTGAGAGAAGCAAAGGAACGTGCAGCAGCCATTGCATGGTGGAATTCTTTGAGGTGTAAAAAAAGGCCTGTCTATTCAACAACCCTACGGGATCTTGTTACTATTAGGCATCCTGTGTATGACATTCATCAGGTGAAGGCTAATCGTACGTCATACATGTATTCCTCAAAGCTAGCCGACATTGTCCTCTCACCAATTGAACGTTTCCAAAGGATGGCTGATGCGGTTGAAAGTTTCATGTTTGCAATTCCAGCCGCACGAGCTCCACCTCCTGTCTGCTGGAGCAGTACAAGTGAAACGCCAGTGTTTCTTCATCCATTGTACAAGCAGAAATACTCTGAAGTTTTGTCACCCCTTCTGTTGCCAATCAGGCCAGCAATTGTCCGACGGCAGGTTTATTTCCCAGATAGGCGTCTTATCCAATTTGACTGTGGGAAACTGCAGGAACTTGCAAGATTGTTGAGGAAATTAAAATCAGAAGGCCACCGGGCATTGATATTCACACAGATGACAAAGATGCTTGATGTACTGGAGGCTTTCATTAATTTGTATGGTTACACTTACATGAGATTAGATGGATCAACACAACCAGAAGAGAGGCAGACCTTGATGCAACGTTTTAATACAAACCCCAAAATTTTTCTTTTCATCTTGTCGACCCGTAGTGGGGGTGTCGGTATCAATCTAGTTGGAGCTGATACAGTTATTTTCTATGATAGTGACTGGAATCCTGCTATGGATCAACAAGCTCAAGATCGGTGCCATAGGATTGGTCAGACACGTGAAGTTCATATCTATAGATTGATAAGTGAAAGCACCATTGAAGAGAATATACTGAAGAAAGCAAAACAGAAGCGTGCACTTGATGATTTAGTTATACAGAGTGGGGGTTATAATACTGAATTTTTCAAGAAGCTTGATCCTATGGAATTATTTTCAGGTCATAGAACACTTCCAGTGAAAAACACGCAGAAGGAGAAAAGCCAGAACATTGGTGATGAAGTTTCTGTAAGTAATGCAGATGTAGAGGCGGCCTTGAAATATGCTGAAGATGAAGCAGATTATATGGCATTGAAGAAAGTTGAACTGGAAGAAGCCGTGGAAAACCAGGAGTTCTCAGAAGAAGCAATTGGGAGACTTGATGACGATGAGTATGTAAATGAAGATGATACAAAGGTTGATGAGCCTTCAGAATTGGCTGAATCAGTTTCTAAGTCAAATAAAGAGAATGCATTAATGTTTGTTGGAAGTGATCCTAAGGAAGAAAGACCTCTCTCTGTATCTATCAAAGATGATGTTGACATGTTGGCTGATGTCAAACAGATGGCGGCGGCGGCGGCGGCCGGTGGACAAGCTGTCTCAGCCTTTGAGAACCAGCTACGCCCAATTGATCGGTATGCCATTCGTTTTCTGGAGGTGTGGGATCCAATTATAGATAAAGCAGCCTTGGAATCTGAAGTCAGGTTTGAGGATACAGAATGGGAATTGGATCGCATTGAGAAGTACAAGGAGGAGATGGAAGCTGAAATTGATGAAGATGAAGAACCTCTTGTATATGAAAGATGGGATGCTGATTTTGCAACTGAGGCATATCGGCAGCAAGTAGAGGCCTTGGCCCAACATCAGTTAATGGAGGAACTTGAACATGAGGCTAGGCAGAAAGAAGAGGCTGATGAAGAAACTTGTGATCCCGGAAAAATTCAAACACCAAGGGATTCTAAGCCCAGACCTAAAAAGAAGCCCAAGAAAACCAAGTTTAAATCTCTGAAGAAAGGATCATTAGCCTCTGAATCCAAACCTATGAAAGAAGAACCACAAACAGATCCAATGTCAATAGATGATGAGATTGTCACTAGCCTGGACCTCGGGTCTCCAAATTCAACTACGCAGAAAAAGCGTAAAAAGCCTAAATTTATAGCTGATGGTGAAGAGAAGACACTAAAGAAGTCCAAGAAGACCAAGAGGGCTGCTGATATTTATGCTTCTGATTCAGATAATGCCTTGTTAGGTTTGCCAGATGAACATGAGGAACCAAAGCAATGTGAAAGTATGGTTGAATTTGAACAGAAACCTCCCAGCAGGAGTAAAATGGGAGGGAAAATATCCATAACTCCAATGCCAGTCAAACGGATTCTGACAATAAAACCAGAAAAAGTGAAGAAGGGTAATGCCTGGTCCAAAGATGGGGTTCCATCAGCTGATTTTTGGCTGCCACAGGAGGATGCAATTTTATGTGCTATTGTTCATGAATATGGTTCTAACTGGAGTTTGGTTAGCGAAACACTCTACGGCATGACTGCTGGAGGATCATACAGGGGCAGATACCGTCATCCTGTGCATTGCTGTGAGAGATTCAGAGAACTAGTTCAAAGATATGTTTTGTCAATGGCAGACAATGCTAATCATGAGAGGGGCAACAGTACTGCCTCAGGAAAGTCTCTCCTGAAAGTTACGGAGGGTAACATTCGGATGTTGTTAGATGTTGCTTCTGAGCAGGAAAATAGAGAGTTACTACTGCAGAAGCATTTTTTCGCTCTGCTTTCTTCTGTCTGGAAGGCAGCATCACGTGTTGACCGGAGGAAAAATCCGCCAACACAAAATGGCCACTATTATGATCATAGTGTCTTTACTTCCATGGGCCATAATTCTCAGAGCCTTCTGAAGAAGCCTTCTGAAAGGATGACAGTCACTAATCTGGCCCAGAGCAGAAAGTTATTAGCTGCTGCACTTGAAGACACCAGTAGTAGGCAACAGGATGATAAAATCTCTCCCTCAAATCAGGGTGACAACGTGCCAGTGGCTACCGATCAGCTGGATGTGATACTGGAATTCCCAAAAGACGAGAGTGACACATTGATCTCATTTCCTTCTGTTATAAATTTATCCATACAAGGGACAGAGCCCCTACAATCGTTAATTTACCCACATGGGAAAGATCGTCATCTTAGAGCTTGTGGATCTGTTGCTGAGGATCGGTTCAGGGAGGCAGCCAGAGCTTGCGAGGAAGATAGTTATGGATGGGCTTCCTCAGTATTCCCAACAAATGATTCAAGGTCCAGACCAGGATCAAAGATACAGGCTTCAGGAAAGCTCAAGTCCTCCACCTCAGACTCCATTAAGCCTTCTAAATCGAAGTCCAAGCGAAATTCAATGGATACTAGTGAGGTACGTCACCAACAGGTCGAGCCATTATTCCAGTCAATGCCATCACTTCCAGCAAAGGATCTGAGGATTGATCTTAATTCATTAGCAACAGACGAAGCGGTGATTAATGATGATATGGATTGCAGCCTGCAGTTTGTCCTAAATGAGGAAAATTCGTTGGAAACAGAAACTTTAGGTATGGTCCCACATGATTTCGTTGCTGGCTTAATCTCAGGCCTTGATGATTATTCAGATTTACCGGAATATACAGACATTGGATAA 6114 0.4226 MASKGPRSKIDHESRAKRQKALEAPREPRRPKTHWDHVIEEMVWLSKDFESERKWKLAQAKKVALRASKGMLDPATRGEKKMKEEEQRLRKVALNISKDVKKFWMKIEKLVLYKHQMELDEKKKKALDKQLEFLLGQTERYSTMLAENLVDSIKPVEKQSPEQHRSAQYKGEDEDVISRSNEANAEFQSDPSDNDEEYDVQSDESEDDEQTLEEDEALITEEERQEELAALRDEVDLPLEELLKRYSGEKAGPATHESSPEHSNDDDTEVRAGNGNENGDGILSISKLGSSSSSKISGRRCAESNGGLTTPAENIAKDKTCQSENLAYDFSDEEEDGDFLLATEDNDDETTLSEEEKMEKMDAIAPKDEIALLQRESDMPVEELLAMYRKYSSGKHREDESEDAASLSEDLLDSPLQDDRKKDPSVSVDEDVKPVEHMAIVQSQTEEQHWEAPHENPEGRDSENLIADAAAAARSAQPTGNTFSTTKVRTKFPFLLKYPLREYQHIGLDWLVTMYEKRLNGILADEMGLGKTIMTIALLAHLACERGIWGPHLIVVPTSVLLNWETEFLKWCPAFKILTYFGSAKERKLKRQGWLKPNSFHVCITTYRLIIQDSKVFKRKKWKYLILDEAHLIKNWKSQRWQTLLNFNSKRRILLTGTPLQNDLMELWSLMHFLMPHVFQSHQEFKDWFSNPISGMVEGEEKVNKEVVDRLHNVLRPFILRRLKQDVEKQLPMKHEHVIYCRLSKRQRNLYEDFIASTETQATLASANFFGMISIIMQLRKVCNHPDLFEGRPIISSFDMWGIDVQLSSSVCSVFSTKPFSSVDLKGFGFLFTHLDYSMTSWESDEVKAIETPASLIMERADMNGLQVIRPKSKDQKSFQGTNIFEEIQRAIWEERLREAKERAAAIAWWNSLRCKKRPVYSTTLRDLVTIRHPVYDIHQVKANRTSYMYSSKLADIVLSPIERFQRMADAVESFMFAIPAARAPPPVCWSSTSETPVFLHPLYKQKYSEVLSPLLLPIRPAIVRRQVYFPDRRLIQFDCGKLQELARLLRKLKSEGHRALIFTQMTKMLDVLEAFINLYGYTYMRLDGSTQPEERQTLMQRFNTNPKIFLFILSTRSGGVGINLVGADTVIFYDSDWNPAMDQQAQDRCHRIGQTREVHIYRLISESTIEENILKKAKQKRALDDLVIQSGGYNTEFFKKLDPMELFSGHRTLPVKNTQKEKSQNIGDEVSVSNADVEAALKYAEDEADYMALKKVELEEAVENQEFSEEAIGRLDDDEYVNEDDTKVDEPSELAESVSKSNKENALMFVGSDPKEERPLSVSIKDDVDMLADVKQMAAAAAAGGQAVSAFENQLRPIDRYAIRFLEVWDPIIDKAALESEVRFEDTEWELDRIEKYKEEMEAEIDEDEEPLVYERWDADFATEAYRQQVEALAQHQLMEELEHEARQKEEADEETCDPGKIQTPRDSKPRPKKKPKKTKFKSLKKGSLASESKPMKEEPQTDPMSIDDEIVTSLDLGSPNSTTQKKRKKPKFIADGEEKTLKKSKKTKRAADIYASDSDNALLGLPDEHEEPKQCESMVEFEQKPPSRSKMGGKISITPMPVKRILTIKPEKVKKGNAWSKDGVPSADFWLPQEDAILCAIVHEYGSNWSLVSETLYGMTAGGSYRGRYRHPVHCCERFRELVQRYVLSMADNANHERGNSTASGKSLLKVTEGNIRMLLDVASEQENRELLLQKHFFALLSSVWKAASRVDRRKNPPTQNGHYYDHSVFTSMGHNSQSLLKKPSERMTVTNLAQSRKLLAAALEDTSSRQQDDKISPSNQGDNVPVATDQLDVILEFPKDESDTLISFPSVINLSIQGTEPLQSLIYPHGKDRHLRACGSVAEDRFREAARACEEDSYGWASSVFPTNDSRSRPGSKIQASGKLKSSTSDSIKPSKSKSKRNSMDTSEVRHQQVEPLFQSMPSLPAKDLRIDLNSLATDEAVINDDMDCSLQFVLNEENSLETETLGMVPHDFVAGLISGLDDYSDLPEYTDIG 2037
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju03g2324 2037 Coils Coil 1433 1456 - -
Alju03g2324 2037 FunFam Photoperiod-independent early flowering 1 470 745 - -
Alju03g2324 2037 CDD SF2_C_SNF 1030 1165 - -
Alju03g2324 2037 CDD DEXQc_SRCAP 500 722 - -
Alju03g2324 2037 Gene3D - 469 745 IPR038718 -
Alju03g2324 2037 FunFam Photoperiod independent early flowering protein 1628 1689 - -
Alju03g2324 2037 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 512 677 IPR014001 -
Alju03g2324 2037 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 1045 1195 IPR001650 -
Alju03g2324 2037 MobiDBLite consensus disorder prediction 1807 1828 - -
Alju03g2324 2037 ProSiteProfiles HSA domain profile. 22 94 IPR014012 -
Alju03g2324 2037 MobiDBLite consensus disorder prediction 279 316 - -
Alju03g2324 2037 MobiDBLite consensus disorder prediction 1486 1505 - -
Alju03g2324 2037 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 483 722 IPR027417 -
Alju03g2324 2037 MobiDBLite consensus disorder prediction 1444 1555 - -
Alju03g2324 2037 MobiDBLite consensus disorder prediction 1906 1936 - -
Alju03g2324 2037 Pfam HSA domain 27 93 IPR014012 -
Alju03g2324 2037 Pfam SNF2-related domain 517 789 IPR000330 GO:0005524|GO:0140658
Alju03g2324 2037 SMART ultradead3 496 689 IPR014001 -
Alju03g2324 2037 MobiDBLite consensus disorder prediction 223 273 - -
Alju03g2324 2037 MobiDBLite consensus disorder prediction 1 33 - -
Alju03g2324 2037 Pfam Helicase conserved C-terminal domain 1042 1154 IPR001650 -
Alju03g2324 2037 MobiDBLite consensus disorder prediction 1937 1951 - -
Alju03g2324 2037 MobiDBLite consensus disorder prediction 1573 1597 - -
Alju03g2324 2037 PANTHER HELICASE SRCAP-RELATED 15 1936 - -
Alju03g2324 2037 Coils Coil 205 225 - -
Alju03g2324 2037 MobiDBLite consensus disorder prediction 1530 1555 - -
Alju03g2324 2037 MobiDBLite consensus disorder prediction 1444 1470 - -
Alju03g2324 2037 MobiDBLite consensus disorder prediction 189 222 - -
Alju03g2324 2037 MobiDBLite consensus disorder prediction 157 180 - -
Alju03g2324 2037 Coils Coil 1385 1405 - -
Alju03g2324 2037 Gene3D - 746 798 - -
Alju03g2324 2037 MobiDBLite consensus disorder prediction 413 435 - -
Alju03g2324 2037 Gene3D - 1013 1260 IPR027417 -
Alju03g2324 2037 SMART bromneu2 23 94 IPR014012 -
Alju03g2324 2037 MobiDBLite consensus disorder prediction 1906 1958 - -
Alju03g2324 2037 Gene3D - 1628 1689 - -
Alju03g2324 2037 MobiDBLite consensus disorder prediction 152 316 - -
Alju03g2324 2037 MobiDBLite consensus disorder prediction 1471 1485 - -
Alju03g2324 2037 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 724 1224 IPR027417 -
Alju03g2324 2037 MobiDBLite consensus disorder prediction 392 435 - -
Alju03g2324 2037 FunFam Protein PHOTOPERIOD-INDEPENDENT EARLY FLOWERING 1 746 811 - -
Alju03g2324 2037 SMART helicmild6 1071 1154 IPR001650 -
Alju03g2324 2037 ProSiteProfiles Myb-like domain profile. 1632 1685 IPR001005 -
Alju03g2324 2037 FunFam Protein PHOTOPERIOD-INDEPENDENT EARLY FLOWERING 1 1007 1261 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju03g2324 Alju-ChrAlju03 50080358 50094167 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju03g2324 520 792 RAD5 or RAD16-like Gene Family AT5G43530 29.503 1.17e-28 124
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Alju03g2324 SNF2_N 6.1e-70 CL0023