Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju03g2318 ATGAACGAGAACAGAGTCGATTGGCAGGGGCAGATTCAACAGAGGCAGGGACTAAATGGGAATTTCAATTCTGAGTCTGGTCATCGTTCGCGTCAATATTTTGATGTTAAACAGCCTTGGAATATTGGTGGTGGAGCTGAAGAGTCACCACAGTACATGGGCTCTGCAAAATCACCCACCACCATTATGAGTGGTTTTGAATCTCCAACTTCTGCTTTCTATGCAGCAGAACGATGCATGGGGTTTCCACAATATCATTCCCAAGTTAACATAAATAATAATTATCCTTCTTTGGGCTCTCCATTTTCCAAGATTCATGATTTGGAACTCCCTTTGTATCAGCAATCCCCAAGGAAAAACACTTCCTTGGATCATTCGCCACACCAAGGTAACTTCAACGTCGAATTATCAAACACCTTGCGAGAATTTGACAACCCAGAAAAACCCAATAAAACACCATGTGGGAATCTGTCAACCGGCAAGTTTTTTCCAATTGAACAGCACAAATTGTTCATTGACGATGATTCTGCCTCAGTCAGGCGAAACCACACAGTTGGTTGCGGGTCATATAATTTTCCTATTTCTTCTCATGTAAGCTTCTGTTCACAGCAAGAGAAGATGTGTCCAACAGTTTCAGGAGCAAGTGTTACAAGTACAGGAAATCCTACTTCTAGTGGTGGGGCAGGAATCTCAAGTAAATCACGTATAAGATGGACTCAGGATCTTCACGACAAGTTTGTTGAATGTGTGAATCGGCTTGGGGGTGCTGAGAAGGCTACACCAAAAGCTATATTAAAGCTGATGGACACAGAGGGGCTGACCATCTTCCATGTAAAGAGTCATTTGCAGAAATACAGAATTGCAAAATACATGCCAGACCCAGCTCAAGGGAAGTCAGACAAAAAAGCCCATATAGACGATGTGCATCATATTGATGTCAAAACTGGCATGCAAATCAGGGAGGCGCTTCAGCTACAGCTAGATGTTCAGAGGCGTCTCCATGAACAACTAGAGATTCAGAGAAGATTACAGCTTCGGATAGAAGAGCAGGGAAAGCAGCTGAAGATGATGTTTGACCAGCGGCAGAAAACATGTAATGGCTCCTCGGATTTGGGCAATACAGAAAATAATGATGCATCTGTTAGTGACCAAGAGGCTGAAGGGTCTGGAAATTCCTCCTTCCCTTCCAAGATAAGTTAG 1200 0.4325 MNENRVDWQGQIQQRQGLNGNFNSESGHRSRQYFDVKQPWNIGGGAEESPQYMGSAKSPTTIMSGFESPTSAFYAAERCMGFPQYHSQVNINNNYPSLGSPFSKIHDLELPLYQQSPRKNTSLDHSPHQGNFNVELSNTLREFDNPEKPNKTPCGNLSTGKFFPIEQHKLFIDDDSASVRRNHTVGCGSYNFPISSHVSFCSQQEKMCPTVSGASVTSTGNPTSSGGAGISSKSRIRWTQDLHDKFVECVNRLGGAEKATPKAILKLMDTEGLTIFHVKSHLQKYRIAKYMPDPAQGKSDKKAHIDDVHHIDVKTGMQIREALQLQLDVQRRLHEQLEIQRRLQLRIEEQGKQLKMMFDQRQKTCNGSSDLGNTENNDASVSDQEAEGSGNSSFPSKIS 399
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju03g2318 399 Pfam Myb-like DNA-binding domain 237 286 IPR001005 -
Alju03g2318 399 MobiDBLite consensus disorder prediction 363 399 - -
Alju03g2318 399 Pfam MYB-CC type transfactor, LHEQLE motif 317 364 IPR025756 -
Alju03g2318 399 SUPERFAMILY Homeodomain-like 231 287 IPR009057 -
Alju03g2318 399 Coils Coil 320 340 - -
Alju03g2318 399 FunFam Myb family transcription factor 232 290 - -
Alju03g2318 399 Gene3D - 232 291 - -
Alju03g2318 399 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 230 290 IPR017930 -
Alju03g2318 399 MobiDBLite consensus disorder prediction 1 29 - -
Alju03g2318 399 NCBIfam myb-like DNA-binding domain, SHAQKYF class 233 288 IPR006447 GO:0003677
Alju03g2318 399 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL11 219 389 IPR044848 GO:0003700
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju03g2318 Alju-ChrAlju03 50043490 50045641 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju03g2318 217 383 G2-like Transcription Factor Family AT4G28610 50.575 8.67e-51 174
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Alju03g2318 Myb_DNA-binding 2.5e-06 CL0123
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Alju03g2318 03 50043490 50045641 Alju03g2318 03 50043490 50045641 ECH