Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju03g2313 ATGAGTTCCGCCGCCGCCGCCTCCAACTCCTCGACGGAGTCCCTGAACGGCTTGAAATTCGGGCAGAAGATATACTTTGAGGATGTGGGTGTGGGAGGTGCTATGAAATCCAGCGGTGGGGCGTCGTCGTCGTCGTCCTCAGGGGTGACCCCGCCAAAGAAGGGGAGGGGCAGTGGGGCTCAGGGGGCTCAGCCACCGAGGTGTCAGGTGGAGGGCTGCAAAGTAGATCTGAGTGATGCCAAGGCTTACTATTCCAGACATAAAGTCTGTAGTATGCACTCCAAATCACCCAGGGTCGTTGTCGCTGGTCAAGAGCAAAGGTTTTGCCAACAGTGTAGCAGGTTTCACCAGCTTTCTGAATTTGATCAAGTAAAACGAAGTTGCCGCAGGCGGCTTGCTGGTCATAATGAACGGAGGAGAAAACCCCCACCCAGCTCCTTAATGGCTTCTCGATATGGCCGACTTGCTCCAGCTAATTTTGATAACAGCAATAGCAGAGGTGGTGGATTTCTAATGGAATTCGCCTCGTATCCGAAACTTAGCCTGAGAAATTCAATGCCAACACCAACATCGTCTGAACAGCTTCCTGGGAATCCAACAGGGACACTTCCATGGCCGGGCCATTCGGAGTCTCCATCATTGCTTTTCTTGCAGGCAGGTTGTTCTCCAGTTGGTGGGACAAGCTACTCTGGATCCAGAAATTCTTCATCAGGGGAAAGCTTTTCGGGATTGACAGACTCAAGCTGTGCTCTCTCTCTTCTGTCAAACCAAGCTTGGGCCCCTCGAAACAGAGCACCAAGTCTTGGTACAAATAATTTGATGAGCTTTGACGACACGCCTATCACACATCTCCCTGCAACTCCTCATCACGGACACGGGACATCCCTCCACCATCAACTTTCAAATGCCTCGTGGTGTTTCAAGGGCATCGATGCTGCTGCTGCTGATAACTGTTCTCATGACATTGCCCCTGACCTTGGCCTGGGTCACCAAATTTCGCAGCCTATCAGCAGCCCTCTTCCTGGGGAGCTTGACGTGTCACAACAGGGTAGGAGGCATTACATGGATCTAGAGCAGTCCAGGGTCTACGATGATTCTCAGCATCACATGCACTGGTCTCTCTAG 1125 0.5209 MSSAAAASNSSTESLNGLKFGQKIYFEDVGVGGAMKSSGGASSSSSSGVTPPKKGRGSGAQGAQPPRCQVEGCKVDLSDAKAYYSRHKVCSMHSKSPRVVVAGQEQRFCQQCSRFHQLSEFDQVKRSCRRRLAGHNERRRKPPPSSLMASRYGRLAPANFDNSNSRGGGFLMEFASYPKLSLRNSMPTPTSSEQLPGNPTGTLPWPGHSESPSLLFLQAGCSPVGGTSYSGSRNSSSGESFSGLTDSSCALSLLSNQAWAPRNRAPSLGTNNLMSFDDTPITHLPATPHHGHGTSLHHQLSNASWCFKGIDAAAADNCSHDIAPDLGLGHQISQPISSPLPGELDVSQQGRRHYMDLEQSRVYDDSQHHMHWSL 374
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju03g2313 374 MobiDBLite consensus disorder prediction 132 151 - -
Alju03g2313 374 MobiDBLite consensus disorder prediction 37 52 - -
Alju03g2313 374 Gene3D - 58 129 IPR036893 GO:0003677|GO:0005634
Alju03g2313 374 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 19 341 IPR044817 GO:0003677
Alju03g2313 374 SUPERFAMILY SBT domain 66 147 IPR036893 GO:0003677|GO:0005634
Alju03g2313 374 Pfam SBP domain 68 141 IPR004333 GO:0003677
Alju03g2313 374 ProSiteProfiles Zinc finger SBP-type profile. 65 142 IPR004333 GO:0003677
Alju03g2313 374 MobiDBLite consensus disorder prediction 183 202 - -
Alju03g2313 374 FunFam Squamosa promoter-binding-like protein 14 59 129 - -
Alju03g2313 374 MobiDBLite consensus disorder prediction 35 68 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju03g2313 Alju-ChrAlju03 49995775 49998772 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju03g2313 18 374 SBP-box Gene Family AT2G42200 44.180 3.25e-66 213
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SBP Alju03g2313 SBP 2.9e-32 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Alju03g2313 03 49995775 49998772 Alju03g2313 03 49995775 49998772 ECH