Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju03g2293 ATGGAGCAAACTACAGTAGGCCTGCCCGGATCCAGTCTTGCTATTCGTGAGCACGATAAGTCCGCCCTTGAATCCATCCAGTTTAACCAAGAAATTCAGGGAATCATGGCTCCGCCCCCGGAAAACGCAAGCTCCTTCACTGCACTTCTTGAACTCCCACCACCGCAAGCCGTGGAGTTACTTCACTCGCCGGACTGTGGCGGAGCGGCCGCTGCAAGCAGCGCATCTGCGAAATCCCTATGCCAAATCAACAATCAGAAACACTATCTATTCCACTCTTTCAGTGGCAATTTAACTTTTCCTGCTAACGCCGCTTTGATCGAGCGAGCTGCCAAGTTCTCTGTGTTTGCCGGGGAAAACTCCAACCCAGAGGATTCCAACGTGGTTGGACGTAATTCGGGTGCCAATTTGGATAAAGTAAAGAATGAGCCACCAGAAAGCGATTCCAATCCTAGTCCAATGCAGGGCTGTGTTTCTGATCCCACCGTTGAGAACTCGAACCAGAGGGCCGCAAAGAGGAAGGAGCGAGAGAAGAAGGTTAAAGGCTCCTCAAAGAAGAGTAAAGGCGCCGCCGATGAGGCGTCCGGGGAAGCTGAAAAGCTTCCTTACGTTCATGTTCGAGCTCGACGAGGTCAAGCCACAGACAGCCATAGCTTAGCAGAAAGGGCGAGGAGAGAGAAGATAAATGCTCGGATGAAGCTTTTGCAAGAGCTGGTCCCCGGATGCAACAAGATATCAGGAACTGCATTGGTTCTGGATGAAATCATCAACCATGTGCAATCTCTACAGCGGCAAGTGGAGTTCTTATCAATGAAATTAGCTGCGGTTAATCCAAGAATGGACTTCAACCTTGACAGCATATTGGCTACAGAAGGTGCATCTCTCATGGAATGCAACTTCCCCGGCACGGTTGCTCCTTTGATGTGGCCAGAAATCCCAGTCAATGGAAACAGACAGCAATACCAACAACAGTGGCAAGTTGATGCATTCCACCAACCAGCTTGGGGGAGAGAAGAAGGAAACCATAATTTTATCACTCCAGATAACTCATTTTTGAGCTATGACTCGTCAGCAAATTCAGCAACTCTGCACTCAAATCAGTTGAAGATGGAGCTCTGA 1119 0.4924 MEQTTVGLPGSSLAIREHDKSALESIQFNQEIQGIMAPPPENASSFTALLELPPPQAVELLHSPDCGGAAAASSASAKSLCQINNQKHYLFHSFSGNLTFPANAALIERAAKFSVFAGENSNPEDSNVVGRNSGANLDKVKNEPPESDSNPSPMQGCVSDPTVENSNQRAAKRKEREKKVKGSSKKSKGAADEASGEAEKLPYVHVRARRGQATDSHSLAERARREKINARMKLLQELVPGCNKISGTALVLDEIINHVQSLQRQVEFLSMKLAAVNPRMDFNLDSILATEGASLMECNFPGTVAPLMWPEIPVNGNRQQYQQQWQVDAFHQPAWGREEGNHNFITPDNSFLSYDSSANSATLHSNQLKMEL 372
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju03g2293 372 MobiDBLite consensus disorder prediction 182 201 - -
Alju03g2293 372 CDD bHLH_AtBPE_like 202 287 - -
Alju03g2293 372 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 210 281 IPR036638 GO:0046983
Alju03g2293 372 SMART finulus 218 268 IPR011598 GO:0046983
Alju03g2293 372 Coils Coil 252 272 - -
Alju03g2293 372 MobiDBLite consensus disorder prediction 146 166 - -
Alju03g2293 372 MobiDBLite consensus disorder prediction 119 201 - -
Alju03g2293 372 PANTHER STEROL REGULATORY ELEMENT-BINDING PROTEIN 114 355 IPR024097 GO:0006355
Alju03g2293 372 MobiDBLite consensus disorder prediction 119 133 - -
Alju03g2293 372 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 212 262 IPR011598 GO:0046983
Alju03g2293 372 FunFam transcription factor bHLH48-like isoform X1 209 281 - -
Alju03g2293 372 Gene3D - 209 282 IPR036638 GO:0046983
Alju03g2293 372 Pfam Helix-loop-helix DNA-binding domain 216 263 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju03g2293 Alju-ChrAlju03 49804054 49808387 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju03g2293 22 372 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G57800 54.617 4.35e-108 320
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Alju03g2293 HLH 1.4e-05 No_clan