Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju03g2287 ATGGAGACCGATAATGGTGACACCAAGTCCAAGATGGAAGACTATGAAGTTATTGAGCAAATTGGCAGAGGAGCTTTTGGCTCCGCTTATCTTGTTCTTCATAACTCTGAGAATAAAAAGTATGTGCTGAAGAAGATTCGCTTGACCAAGCAAACCGAGAAATTCAAACGAACAGCGCACCAGGAGATGAACCTGATTGCAAAACTAAATAACCCATACATTGTGGAGTACAAAGATGCTTGGGTGGAGAAGGGGGAGTATATATGCATTGTAACTGGCTATTGTGAAGGAGGTGACATGGCTGAGAACATAAAGAAAGCTCGGGGATCATTTTTTCCTGAGGAGAAGGTCTGCAAATGGCTGACTCAGTTGTTGATAGCTGTGGACTACCTGCACTCTAATCGTGTACTCCATAGAGATCTCAAGTGTTCCAACATATTTCTCACCAAAGACAACGATATTCGTCTCGGTGACTTTGGTCTGGCAAAGCTGCTTAATTCAGAAGACCTTGCTTCCTCGTGGTGTGTGCTTTCCATTTTAGAATTGATAATGCTGCATCCATATCTTGCTCTGAACTTCTCATCGCAGATGTTGTTGGAACTCCAAACTATGTGTCCTGAGCTACTTGCAGATATACCCTATGGTTATAAATCTGATATATGGTCACTTGGTTGCTGCATGTTTGAAATTGCTGCACATCAACCAGCGTTTCGTGCTCCTGATATGGCAGGGCTTATCAATAAGATAAATAGATCCTCCATTTCTCCATTGCCTATTGTTTATTCTTCCACATTGAAACAACTCATAAAGAGCATGCTCAGGAAAAACCCTGAACATAGACCAACAGCAGCTGAATTGTTAAGGCATCCTCTTTTACAACCATATGTTCTCCGATGTCGTAATGCATCATCTAATGTTCTTCCAGTGTATCCCATAGTCAACTCAAAGGATAAAACAAAGAGATCTTATAAATCTGGTGCCAGAAAAGAACGCAAGGACAAAGAAGTGGGATTAGAAAATCTTTTGGTTAGAGTTCATCCATTTGAGGGAAATGAAGATCTGCCTAACAATGGCAAGCTATCGGTCTCAAGCGGTGCAGAAGACATCCTTCAGACCAATCTGGCTGATCCTGCCAGCTTCATAACTGAATCATCTACTAGTATCAGTGGCTCAAAGGATGGATCAACAACATCTGAATCAACCATTTGCAGCATGTACAAGGAAGCAGACTGTAAAAGTATACCTACAAGGGAGACAACTGACAATGGAATTACATCAAAGAGTATGCCAGGTCCTAAGCATGAAGAACAAGTATTTACTGCTGAGCTTCAAAAATCAGAAGGGGTTGACACAGTTGCGGTGACCACGAAAGTTGAAGATGCTTTAGCCAATGGAGATTTCAATAAAGCTGAAGCGCAGAGGGATGTCAATCTTGATGACTTCAGGAAATCAACAGCATCAAGCGAAGAAAGCACTGATAAAGGTGGGTCTCTAGATGAGGAAATGTCACCACCAGCGTTGCCACCTAGTAGTAAGGTTGAAGATGATTCTGAATCGAGAGGAGTCTACTTACAGAAAAGGGAAGCCTCACATACGTGCGTATCTTCTGAGAGTAATGATACACTTGCAGGTAAGGATGAAGGCAGAGAAAAGCCACACACGCATAAAGAAAATGATAGTGCTTGCGTGGTTGATCAGACACCAAGTGACAATTCTTTAAGTACACTTAATGCAATAGGGGGTAATGAAGCCAAGAGTGAGTTGGATAGTTCCTGCGAGGAAAGAGCTCATGCTCTAGAGACTCTACTTGAACTATGTGCTGAGCTACTCAAGCAAGACAAACTTGAAGAGCTTGCTGGTGTGCTGAGACCATTTGGCCCGGAAGCTGTCTCTTCCAGAGAGACTGCAATATGGTTGACAAAGAGCCTCATGTCTGCACAAAAATTCAATACTGAAACCTAG 1962 0.4241 METDNGDTKSKMEDYEVIEQIGRGAFGSAYLVLHNSENKKYVLKKIRLTKQTEKFKRTAHQEMNLIAKLNNPYIVEYKDAWVEKGEYICIVTGYCEGGDMAENIKKARGSFFPEEKVCKWLTQLLIAVDYLHSNRVLHRDLKCSNIFLTKDNDIRLGDFGLAKLLNSEDLASSWCVLSILELIMLHPYLALNFSSQMLLELQTMCPELLADIPYGYKSDIWSLGCCMFEIAAHQPAFRAPDMAGLINKINRSSISPLPIVYSSTLKQLIKSMLRKNPEHRPTAAELLRHPLLQPYVLRCRNASSNVLPVYPIVNSKDKTKRSYKSGARKERKDKEVGLENLLVRVHPFEGNEDLPNNGKLSVSSGAEDILQTNLADPASFITESSTSISGSKDGSTTSESTICSMYKEADCKSIPTRETTDNGITSKSMPGPKHEEQVFTAELQKSEGVDTVAVTTKVEDALANGDFNKAEAQRDVNLDDFRKSTASSEESTDKGGSLDEEMSPPALPPSSKVEDDSESRGVYLQKREASHTCVSSESNDTLAGKDEGREKPHTHKENDSACVVDQTPSDNSLSTLNAIGGNEAKSELDSSCEERAHALETLLELCAELLKQDKLEELAGVLRPFGPEAVSSRETAIWLTKSLMSAQKFNTET 653
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju03g2287 653 FunFam Serine/threonine-protein kinase Nek6 1 94 - -
Alju03g2287 653 PANTHER SERINE/THREONINE-PROTEIN KINASE NEK 12 569 - -
Alju03g2287 653 MobiDBLite consensus disorder prediction 478 497 - -
Alju03g2287 653 MobiDBLite consensus disorder prediction 415 434 - -
Alju03g2287 653 ProSiteProfiles Protein kinase domain profile. 15 292 IPR000719 GO:0004672|GO:0005524|GO:0006468
Alju03g2287 653 CDD STKc_Nek 14 292 - -
Alju03g2287 653 SUPERFAMILY Protein kinase-like (PK-like) 12 323 IPR011009 -
Alju03g2287 653 MobiDBLite consensus disorder prediction 542 560 - -
Alju03g2287 653 Gene3D Transferase(Phosphotransferase) domain 1 95 306 - -
Alju03g2287 653 ProSitePatterns Serine/Threonine protein kinases active-site signature. 136 148 IPR008271 GO:0004672|GO:0006468
Alju03g2287 653 Pfam Protein kinase domain 15 291 IPR000719 GO:0004672|GO:0005524|GO:0006468
Alju03g2287 653 Gene3D Phosphorylase Kinase; domain 1 2 94 - -
Alju03g2287 653 ProSitePatterns Protein kinases ATP-binding region signature. 21 44 IPR017441 GO:0005524
Alju03g2287 653 MobiDBLite consensus disorder prediction 478 569 - -
Alju03g2287 653 SMART serkin_6 15 292 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju03g2287 Alju-ChrAlju03 49760652 49765233 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju03g2287 21 323 MAP Kinase Kinase Kinase AT1G53570 29.545 1.47e-31 127
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK NEK Alju03g2287 Pkinase 1.5e-59 CL0016
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Alju01g1150 01 8888947 8893957 Alju03g2287 03 49760652 49765233 CCT
Alju03g2287 03 49760652 49765233 Alju03g2287 03 49760652 49765233 ECH