Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju03g2286 ATGGCTGATCCTTTCTCCAATTTCTTCTCTCCTCCTCCTTCTGGATTCTTCCAGTTCAATCCCATCCCTTACTATTATCCTCCTCCTCCTCCTCCTAACCCTCCTCCACCAGTATCCTCACACCAACATCATCATCATCCCTATCTCCATAACTTTATAGCTTCTTCTTCTTCTTCTTCGCCTCCTACTTCACCTCCTCTCAGAGAAGCCCTCCCTCTTCTCAACCTCAACCCCACTCCCACTCATAAGCCTCATCATGAGCCTCCTTGCACTACTTTCATGGAAGTGGAAGATCAATATGCTCCTAAACCTAAAGAAGATGATGAAGAGGAGGATGATGAGGATGAGGACGACAACAGTGTGACTATTGCCCTCCACATAGGCCTCCCTAACCCTAGTGCTGCTGAGATGGCCTCTATCCTCTCTTCTTCTTCTTCTTCTTCCTCTCACCCAGCACAAGAAGCAGCACCTGATGCTGATCTTGCGGATAATCCTTGCTCAGGACTCTCCAGGATCAACAAGGGCCAGTACTGGATCCCTACTCCTACCCAGATTCTCATTGGTCCTACCCAGTTCTCTTGCCCTGTTTGCTCCAAAACCTTCAACCGCTACAACAACATGCAGATGCATATGTGGGGGCATGGATCACAGTACAGAAAAGGGCCAGAATCTCTGAGAGGTACACAACCAACGGGCATGTTGAGGCTTCCTTGTTATTGTTGTGCCCCAGGTTGCAGGAACAACATTGACCACCCAAGGGCTAAGCCCCTAAAGGACTTTAGAACCCTTCAGACTCACTACAAGAGGAAGCATGGCATTAAGCCCTTCATGTGCAGAAAATGTGGCAAGGCTTTTGCTGTGAGAGGTGATTGGAGAACCCATGAGAAGAACTGTGGCAAGCTTTGGTATTGTATTTGTGGCTCTGATTTTAAGCACAAGAGATCTCTTAAAGATCATATCAAGGCTTTTGGGAGTGGCCATGCTGCTTATGGGATGGATGGCTTTGAAGAAGAAGATGAGCCAGCTTCCGAAGTAGAGCAAGATAATGATTCAACCCAGTGA 1062 0.4765 MADPFSNFFSPPPSGFFQFNPIPYYYPPPPPPNPPPPVSSHQHHHHPYLHNFIASSSSSSPPTSPPLREALPLLNLNPTPTHKPHHEPPCTTFMEVEDQYAPKPKEDDEEEDDEDEDDNSVTIALHIGLPNPSAAEMASILSSSSSSSSHPAQEAAPDADLADNPCSGLSRINKGQYWIPTPTQILIGPTQFSCPVCSKTFNRYNNMQMHMWGHGSQYRKGPESLRGTQPTGMLRLPCYCCAPGCRNNIDHPRAKPLKDFRTLQTHYKRKHGIKPFMCRKCGKAFAVRGDWRTHEKNCGKLWYCICGSDFKHKRSLKDHIKAFGSGHAAYGMDGFEEEDEPASEVEQDNDSTQ 353
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju03g2286 353 MobiDBLite consensus disorder prediction 333 353 - -
Alju03g2286 353 Gene3D Classic Zinc Finger 191 214 - -
Alju03g2286 353 SUPERFAMILY beta-beta-alpha zinc fingers 258 296 IPR036236 -
Alju03g2286 353 PANTHER ZINC FINGER PROTEIN WIP2 42 349 IPR043584 GO:0003700|GO:0010468
Alju03g2286 353 SMART c2h2final6 276 296 IPR013087 -
Alju03g2286 353 SMART c2h2final6 192 214 IPR013087 -
Alju03g2286 353 ProSiteProfiles Zinc finger C2H2 type domain profile. 192 219 IPR013087 -
Alju03g2286 353 Pfam Zinc finger, C2H2 type 192 211 IPR013087 -
Alju03g2286 353 FunFam Zinc finger protein WIP2 245 327 - -
Alju03g2286 353 Gene3D Classic Zinc Finger 254 330 - -
Alju03g2286 353 MobiDBLite consensus disorder prediction 104 119 - -
Alju03g2286 353 MobiDBLite consensus disorder prediction 335 353 - -
Alju03g2286 353 FunFam zinc finger protein WIP2-like 191 214 - -
Alju03g2286 353 ProSiteProfiles Zinc finger C2H2 type domain profile. 276 296 IPR013087 -
Alju03g2286 353 SUPERFAMILY beta-beta-alpha zinc fingers 187 214 IPR036236 -
Alju03g2286 353 MobiDBLite consensus disorder prediction 138 153 - -
Alju03g2286 353 ProSitePatterns Zinc finger C2H2 type domain signature. 194 214 IPR013087 -
Alju03g2286 353 MobiDBLite consensus disorder prediction 138 166 - -
Alju03g2286 353 MobiDBLite consensus disorder prediction 20 41 - -
Alju03g2286 353 MobiDBLite consensus disorder prediction 20 93 - -
Alju03g2286 353 MobiDBLite consensus disorder prediction 100 119 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju03g2286 Alju-ChrAlju03 49744788 49747033 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju03g2286 1 350 C2H2 Transcription Factor Family AT3G57670 61.697 7.31e-144 410
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Alju03g2286 zf-C2H2 0.0044 CL0361
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Alju01g1146 01 8869035 8871312 Alju03g2286 03 49744788 49747033 CCT
Alju03g2286 03 49744788 49747033 Alju03g2286 03 49744788 49747033 ECH